PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006895-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 307aa    MW: 35159.4 Da    PI: 6.7798
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006895-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-131966148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed++l +++k +G g+W + +++ g++R +k+c++rw++yl
  PSME_00006895-RA 19 RGAWTANEDKILTEYIKTHGVGQWISLPKKSGLKRYGKSCRLRWLNYL 66
                      89******************************99************97 PP
2Myb_DNA-binding55.61.2e-1772117148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ ++eEdellv+++++lG++ W++Ia +++ gRt++++k++w ++l
  PSME_00006895-RA  72 RGNISPEEDELLVRLHRLLGNR-WALIAGRLP-GRTDNEIKNYWITHL 117
                       7899******************.*********.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6231466IPR017930Myb domain
SuperFamilySSF466895.87E-2817113IPR009057Homeodomain-like
SMARTSM007179.2E-91868IPR001005SANT/Myb domain
PfamPF002492.1E-111966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-222073IPR009057Homeodomain-like
CDDcd001679.83E-72166No hitNo description
PROSITE profilePS5129427.73867121IPR017930Myb domain
SMARTSM007174.6E-1771119IPR001005SANT/Myb domain
PfamPF002491.1E-1572117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2574121IPR009057Homeodomain-like
CDDcd001671.25E-1276117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRSPSYRCA KDDDEGINRG AWTANEDKIL TEYIKTHGVG QWISLPKKSG LKRYGKSCRL  60
RWLNYLRPDI KRGNISPEED ELLVRLHRLL GNRWALIAGR LPGRTDNEIK NYWITHLSKK  120
VQLGEFDPSS QRNFKRRNSP SYSDYKGEKV VDKDDYKGRN AQAVETISAR LCGRVTVDVQ  180
NQDSYSSDVL DILVGTNQGE KMEFKAADNH VAQTDISKSW CQLLLEDCMG DYQYDQLELI  240
NGLQTDRSHD HLFESSFLSP CRSKLFQEIH YSTSCNLVDN ALPHSEHFNS TCLESLMELG  300
EFSSLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25191217108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361685.21e-63PREDICTED: transcription factor TT2
TrEMBLA0A167V8X01e-116A0A167V8X0_PICAB; Transcription factor MYB29
STRINGXP_009361685.15e-63(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-55myb domain protein 3