PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00006754-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 295aa MW: 33020.5 Da PI: 5.1043 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 171.7 | 3.6e-53 | 190 | 294 | 1 | 105 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+rpaqgs+w+qdycs+fh ++alneg+pg+ pvlrp+gidlkdgllfa+lsak+ k gip+cega+++kspwna+ PSME_00006754-RA 190 PPPEAFLGPKCALWDCPRPAQGSNWCQDYCSNFHGMVALNEGPPGMGPVLRPGGIDLKDGLLFATLSAKTVVKYFGIPKCEGATAKKSPWNAP 282 89******************************************************************************************* PP VOZ 94 elfdlslleget 105 elfd+ +l+ge PSME_00006754-RA 283 ELFDFFVLQGEF 294 **********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MVESALKIDQ DQTSNRHMMG KRSKSMPKST THRLFKTKAK NKGMFTDLQQ VRKESRVNDA 60 LVLEEQVHQL PRECKAELHE ESPTTSMLEA SLCLSDLSCD MWRLLQLHEE EDDATSILAA 120 PYNSKLQLNE NTLEAANPSS FQEAIPPNEM RKDFYVDHVN AEAQNIDGTN PEVEEEHIPK 180 FQSPCPRISP PPEAFLGPKC ALWDCPRPAQ GSNWCQDYCS NFHGMVALNE GPPGMGPVLR 240 PGGIDLKDGL LFATLSAKTV VKYFGIPKCE GATAKKSPWN APELFDFFVL QGEFI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015576892.1 | 2e-95 | transcription factor VOZ1 isoform X2 | ||||
Swissprot | Q9SGQ0 | 1e-86 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A445I667 | 1e-92 | A0A445I667_GLYSO; Transcription factor VOZ1 isoform A | ||||
TrEMBL | I1M050 | 1e-92 | I1M050_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G24170.1 | 2e-93 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 4e-89 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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