PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00006259-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 381aa MW: 43677.5 Da PI: 7.6301

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00006259-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	312	4.2e-96	151	339	29	217
VOZ 29 ycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafes 121 +fh + lneg+pg+ +lrp+gidlkd+llf al ak gk gipeceg +t+kspwna++lfdl +l+ge ir+wlff kprr fe PSME_00006259-RA 151 TSRNFHGIVDLNEGPPGMGSILRPGGIDLKDDLLFVALGAKNMGKYFGIPECEGVTTTKSPWNAPKLFDLFVLQGEFIRQWLFFYKPRRDFEN 243 5678*************************************************************************************** PP VOZ 122 gnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgr 214 gnrkqrslpdy+grgwhesr qvmk++gglkrsyymdpqps++fewhlyeye n++d++aly+lelk+vd+kk++k+kv+ ds++dlq+k+gr PSME_00006259-RA 244 GNRKQRSLPDYNGRGWHESRNQVMKKLGGLKRSYYMDPQPSNQFEWHLYEYERNNCDSCALYQLELKQVDSKKNTKAKVMGDSVSDLQHKIGR 336 ******************************************************************************************* PP VOZ 215 lta 217 l+a PSME_00006259-RA 337 LSA 339 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
RQIFEILHDV KSIIKHLAEG TVSNASSVLM MGKRSKNMSK KTTHQLFKNK AKKWARKESQ 60 FYDTLVLEEQ VHQLLREWKV ASLCSLDLSC DMWSLLQLHE EEDHATSVLV APYDSKLQLK 120 ENTLEAANPS SFQEDFYVDH SNAQAQTIDG TSRNFHGIVD LNEGPPGMGS ILRPGGIDLK 180 DDLLFVALGA KNMGKYFGIP ECEGVTTTKS PWNAPKLFDL FVLQGEFIRQ WLFFYKPRRD 240 FENGNRKQRS LPDYNGRGWH ESRNQVMKKL GGLKRSYYMD PQPSNQFEWH LYEYERNNCD 300 SCALYQLELK QVDSKKNTKA KVMGDSVSDL QHKIGRLSAE LVVDTKGITK GLVALVSNNF 360 LYGQVVQYGY YVEEENVYYG T

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

RQIFEILHDV KSIIKHLAEG TVSNASSVLM MGKRSKNMSK KTTHQLFKNK AKKWARKESQ  60
FYDTLVLEEQ VHQLLREWKV ASLCSLDLSC DMWSLLQLHE EEDHATSVLV APYDSKLQLK  120
ENTLEAANPS SFQEDFYVDH SNAQAQTIDG TSRNFHGIVD LNEGPPGMGS ILRPGGIDLK  180
DDLLFVALGA KNMGKYFGIP ECEGVTTTKS PWNAPKLFDL FVLQGEFIRQ WLFFYKPRRD  240
FENGNRKQRS LPDYNGRGWH ESRNQVMKKL GGLKRSYYMD PQPSNQFEWH LYEYERNNCD  300
SCALYQLELK QVDSKKNTKA KVMGDSVSDL QHKIGRLSAE LVVDTKGITK GLVALVSNNF  360
LYGQVVQYGY YVEEENVYYG T

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021597292.1	1e-112	transcription factor VOZ1-like isoform X2
Swissprot	Q9SGQ0	2e-93	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A426X3X9	1e-105	A0A426X3X9_ENSVE; Uncharacterized protein
STRING	ERN14021	1e-105	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-95	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]