PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00006177-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 454aa MW: 51268.5 Da PI: 7.615

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00006177-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.9	3.2e-56	17	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL +kv +++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++ PSME_00006177-RA 17 LPPGFRFHPTDEELITHYLVRKVLDSTFTG-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIF 108 79***********************999.89***********99999************************************ PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 s+ +++lvg+kktLvfykgrapkgek++Wvmheyrle PSME_00006177-RA 109 SSrSSSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 145 9866778**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-65	13	169	IPR003441	NAC domain
PROSITE profile	PS51005	62.015	17	169	IPR003441	NAC domain
Pfam	PF02365	2.4E-28	18	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MEGLNFTYTQ DKGDTQLPPG FRFHPTDEEL ITHYLVRKVL DSTFTGRAIA EVDLNKCEPW 60 DLPEKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIFSS RSSSLVGMKK 120 TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY NQLPKTSKDE WVVCRIFQKS IGAKKSSSGF 180 NRSSYLDVGS PSLPPLSAVN DESGSLESEG SAREHVSCFS NPQYNNNNNS GFRTPTHHLQ 240 QQQQRTSADS AELSEIASIM RSTAPFIHNM VLNDPRLSMN NISRPSPFPP FLNLRQENNH 300 VQQPPLLFSQ LASFPSNSIP TNVNFPMENQ AQLHSLLPGL PQNALLRALV EQYNDPGTLK 360 HCKLEPTFGP QLDKSGKLEL GSQWLETQQR PEMNMENNGL PQQMQSQSAV SLPQAETCLG 420 TEMNSEMVSN RLNRPFQVGP SSTSPVDLDS FWGY

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MEGLNFTYTQ DKGDTQLPPG FRFHPTDEEL ITHYLVRKVL DSTFTGRAIA EVDLNKCEPW  60
DLPEKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIFSS RSSSLVGMKK  120
TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY NQLPKTSKDE WVVCRIFQKS IGAKKSSSGF  180
NRSSYLDVGS PSLPPLSAVN DESGSLESEG SAREHVSCFS NPQYNNNNNS GFRTPTHHLQ  240
QQQQRTSADS AELSEIASIM RSTAPFIHNM VLNDPRLSMN NISRPSPFPP FLNLRQENNH  300
VQQPPLLFSQ LASFPSNSIP TNVNFPMENQ AQLHSLLPGL PQNALLRALV EQYNDPGTLK  360
HCKLEPTFGP QLDKSGKLEL GSQWLETQQR PEMNMENNGL PQQMQSQSAV SLPQAETCLG  420
TEMNSEMVSN RLNRPFQVGP SSTSPVDLDS FWGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	17	175	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	17	175	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	17	175	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	17	175	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	17	175	20	174	NAC domain-containing protein 19
3swm_B	1e-55	17	175	20	174	NAC domain-containing protein 19
3swm_C	1e-55	17	175	20	174	NAC domain-containing protein 19
3swm_D	1e-55	17	175	20	174	NAC domain-containing protein 19
3swp_A	1e-55	17	175	20	174	NAC domain-containing protein 19
3swp_B	1e-55	17	175	20	174	NAC domain-containing protein 19
3swp_C	1e-55	17	175	20	174	NAC domain-containing protein 19
3swp_D	1e-55	17	175	20	174	NAC domain-containing protein 19
4dul_A	1e-55	17	175	17	171	NAC domain-containing protein 19
4dul_B	1e-55	17	175	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT102493	0.0	BT102493.1 Picea glauca clone GQ0195_G17 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001292765.1	1e-113	uncharacterized protein LOC18434770
Refseq	XP_020523105.1	1e-113	uncharacterized protein LOC18434770 isoform X1
Refseq	XP_020523106.1	1e-113	uncharacterized protein LOC18434770 isoform X1
Swissprot	Q9FLJ2	1e-96	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	G8CPZ0	0.0	G8CPZ0_PICAB; Cup-shaped cotyledon
STRING	ERN06571	1e-112	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	9e-99	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]