PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00005364-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB

Protein Properties

Length: 341aa MW: 38724.4 Da PI: 6.318

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00005364-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.7	3.6e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l ++v+ +G g W+ +++ g++R++k+c++rw++yl PSME_00005364-RA 14 RGAWTAIEDTILSEYVRIHGEGKWRNVPKIAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	50.4	5e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ PSME_00005364-RA 67 RGNISPDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTGNEIKNYWNTH 111 7899****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-21	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.843	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.36E-27	12	108	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-13	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	4.70E-9	16	61	No hit	No description
PROSITE profile	PS51294	25.637	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	9.39E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGRSPCPAKE ELSRGAWTAI EDTILSEYVR IHGEGKWRNV PKIAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SPDEEDLIIR LHRLLGNRWS LIAGRLPGRT GNEIKNYWNT HISTKLFPSI 120 DECQQKNLQN LSRSSESPVP VKNHVFKATA VKITSAVRHC EMVRPNGYNS DGCSNRTSDE 180 AFKLCTVNEN RKSSWRNLLV NDSIRNEESK CFAFAMMDNP EETAPTISTS SMLSLADQQS 240 PDCSHFRGDA ATFAENLLYL SELSSTECNL LASASECSSD FASEDFYREM EELYDNAKRL 300 DWIHEFDHLQ NGSLFESEKE YVGETRSGRP LINAMLENVV N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-22	11	116	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LMJ6	1e-138	B8LMJ6_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-59	myb domain protein 3