PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005361-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 306aa    MW: 35297.5 Da    PI: 5.6423
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005361-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-142495147
                      TSSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqky 47
                      rg+ ++eE+el+++++++lG++                           W++Ia +++ gRt++++k++w+++
  PSME_00005361-RA 24 RGNISPEEEELIIRLHRLLGNRyaenywrrtdllmhhnlstpyeiinaMWSLIAGRLP-GRTGNEIKNYWNTH 95
                      7899******************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.065118IPR017930Myb domain
SuperFamilySSF466892.56E-10422IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-11430IPR009057Homeodomain-like
PROSITE profilePS5129415.79119100IPR017930Myb domain
SMARTSM007171.8E-92398IPR001005SANT/Myb domain
PfamPF002491.0E-112495IPR001005SANT/Myb domain
CDDcd001673.32E-62896No hitNo description
Gene3DG3DSA:1.10.10.605.2E-193196IPR009057Homeodomain-like
SuperFamilySSF466892.56E-106896IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGLKRCGKSC RLRWLNYLRP DIKRGNISPE EEELIIRLHR LLGNRYAENY WRRTDLLMHH  60
NLSTPYEIIN AMWSLIAGRL PGRTGNEIKN YWNTHISTKL RPSINECQHK NLQKLSRSSE  120
SPVSVQNHVF KATAVKITLP VRPCEIVRPN GYNSDGCSNR TSDEAFKVCS VNENMKSSWR  180
NLLVTDSIRN EESECSDFAM SDNPEETAPT ISTSSMLSLA DQQSPDCSHF RADAATFAEN  240
LLYLSELFST ECNLLASASE CSSDFKSEDF YREMEELYDN AKRLDWIHEF DHLQNGNLLE  300
SEKEWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-13510040108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1167526e-35BT116752.1 Picea glauca clone GQ03806_A01 mRNA sequence.
GenBankKU1312196e-35KU131219.1 Picea abies transcription factor MYB30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W2KRF41e-102A0A1W2KRF4_PINRA; MYB transcription factor MYB6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-27myb domain protein 3