PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005184-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 431aa    MW: 48743.8 Da    PI: 5.4256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005184-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-18292342255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrd       k +r++lg+f taeeAa a+++a+ k++g
  PSME_00005184-RA 292 HYRGVRQRP-WGKYAAEIRD----SarKGARVWLGTFTTAEEAALAYDRAAYKMRG 342
                       7********.**********....33345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-31291350IPR001471AP2/ERF domain
PfamPF008472.4E-13292342IPR001471AP2/ERF domain
PROSITE profilePS5103223.446292350IPR001471AP2/ERF domain
SMARTSM003801.5E-37292356IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22292351IPR016177DNA-binding domain
CDDcd000181.42E-30292350No hitNo description
PRINTSPR003671.3E-10293304IPR001471AP2/ERF domain
PRINTSPR003671.3E-10316332IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MIRWSFIAVT RTVIDHVWLT DHKTKILAFE EMTRLGSSTT PSKYVELPPK ISYKWRTSFP  60
QRGEEPLSFN RFQEMAMNCG NQEASVLDRI RCHLLDDFES SFFLTGNLPS DTTRNGSAEE  120
ENFIQTALTP DLVDDNRREM QTETPTPVVK SARPLLSVSV TRPGSFHWEN IPVDWGLKNS  180
VAPSVSPCLS AAWTKLPLDE NDSEDMILYG ILKEAAHKGW MARTPKEDPV TEIKNEAGLY  240
AQQEADVRQE TESVPLPLPQ PPKNVKNNEA DVRQETEIAP PPKNVKKNEG RHYRGVRQRP  300
WGKYAAEIRD SARKGARVWL GTFTTAEEAA LAYDRAAYKM RGSRALLNFP LQLAGECTNP  360
STPTSEKVES NGENNLSGKR EREQVSSNGS EVEWDRQCRM RLELDNNNNK MDLGMVEELL  420
CGNMATPPLN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-31289353266ATERF1
3gcc_A1e-31289353266ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1031892e-35BT103189.1 Picea glauca clone GQ0208_B04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PQI31e-151C0PQI3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-36ethylene responsive element binding factor 1