PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00004678-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | VOZ | ||||||||
Protein Properties | Length: 238aa MW: 26136.3 Da PI: 4.1907 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 150.1 | 1.4e-46 | 141 | 234 | 1 | 94 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkc lwdc+rpaqgs+w+qdycs+fh ++alneg+pg+ pvlrp+gidlkdgllf+al ak+ k gi ecegaat+kspwna+ PSME_00004678-RA 141 PPPKAFLGPKCPLWDCPRPAQGSDWCQDYCSNFHGMVALNEGPPGMGPVLRPGGIDLKDGLLFSALGAKTVVKYGGILECEGAATKKSPWNAP 233 89******************************************************************************************9 PP VOZ 94 e 94 PSME_00004678-RA 234 G 234 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVEASLCSSD LSCDMWSLLQ LHEEEDDATS ILATPYNSKL QLNENTLEAA NPSSFQEAIP 60 PSEMRKDFYV DHADAEAQNI DETSRSENIH TESLLQTTDE GLEAVAQMNQ YFDHNLCLSL 120 DPEVEEEHIP KFQGPCPRIY PPPKAFLGPK CPLWDCPRPA QGSDWCQDYC SNFHGMVALN 180 EGPPGMGPVL RPGGIDLKDG LLFSALGAKT VVKYGGILEC EGAATKKSPW NAPGMGYK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657013.1 | 6e-60 | PREDICTED: transcription factor VOZ1 | ||||
Refseq | XP_019079230.1 | 6e-60 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 6e-52 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A438EGC1 | 1e-61 | A0A438EGC1_VITVI; Transcription factor VOZ1 | ||||
STRING | ERN14021 | 8e-59 | (Amborella trichopoda) | ||||
STRING | VIT_12s0028g02670.t01 | 8e-59 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 3e-54 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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