PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004494-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 358aa    MW: 41179.4 Da    PI: 8.7531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004494-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151966148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed++l +++k +G g W++ +++ g++R++k+c++rw++yl
  PSME_00004494-RA 19 RGAWTASEDKILSEYIKNHGDGGWRSLSNRAGLKRCAKSCRLRWLNYL 66
                      89********************************************97 PP
2Myb_DNA-binding54.42.8e-1772119148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 
                       rg+ ++eEdel v+++++lG++ W++Ia +++ ++R++k+c++rw++yl
  PSME_00004494-RA  72 RGNISPEEDELVVRLHRLLGNR-WSLIAGRLPgLKRCGKSCRLRWLNYL 119
                       7899******************.************************97 PP
3Myb_DNA-binding569.3e-18125168146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ ++eEdellv+++++lG++ W++Ia +++ gRt++++k++w++
  PSME_00004494-RA 125 RGNISPEEDELLVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 168
                       7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.671466IPR017930Myb domain
SMARTSM007176.7E-121868IPR001005SANT/Myb domain
PfamPF002491.2E-141966IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-222097IPR009057Homeodomain-like
CDDcd001673.16E-82166No hitNo description
Gene3DG3DSA:1.10.10.607.9E-222189IPR009057Homeodomain-like
PROSITE profilePS5129427.28867123IPR017930Myb domain
SMARTSM007171.2E-1571121IPR001005SANT/Myb domain
PfamPF002491.6E-1572119IPR001005SANT/Myb domain
CDDcd001672.41E-976119No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2290125IPR009057Homeodomain-like
SuperFamilySSF466891.36E-20105178IPR009057Homeodomain-like
PROSITE profilePS5129422.153124174IPR017930Myb domain
SMARTSM007175.7E-17124172IPR001005SANT/Myb domain
PfamPF002491.1E-15125168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-25126173IPR009057Homeodomain-like
CDDcd001678.18E-12129170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
IMGRSPSSSK HDQDRSLNRG AWTASEDKIL SEYIKNHGDG GWRSLSNRAG LKRCAKSCRL  60
RWLNYLRPDI KRGNISPEED ELVVRLHRLL GNRWSLIAGR LPGLKRCGKS CRLRWLNYLR  120
PDIKRGNISP EEDELLVRLH RLLGNRWSLI AGRLPGRTDN EIKNYWNTRL SKRVRMGEFE  180
PKFQKINKRS SDIPSSSEKE GVDKENYSAQ TLPLKTKAVR YSGRTVADIF KYDHVVHDTH  240
DGIDREEGLK VADNDDEEID TSKSWSKLLV EDCMEDYQQD RLEEINGLQP KSMINTNNGT  300
DDHHQFPSPS LSQSIIVQES SSSKKVVHLL IEFPHSKDFN CSYLDTFLDL GELSILLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-33171744159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-33171744159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393436.12e-59transcription factor MYB2 isoform X1
TrEMBLA0A2H4Z0B01e-130A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-46myb domain protein 3