PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00004294-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 486aa MW: 53985.1 Da PI: 5.0357

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00004294-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	396.9	4.7e-122	171	387	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaqg +w+qdycs fh t+a neg+pg++ vlrp+gidlkdg+lf+alsak+q k vgipecegaatakspwna PSME_00004294-RA 171 PPPAAFLGPKCALWDCSRPAQGKKWCQDYCSDFHMTVASNEGAPGMRHVLRPGGIDLKDGPLFDALSAKTQEKAVGIPECEGAATAKSPWNAY 263 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdkpr+ fesgnrkq slpdysg gwhesrkqv+k+fgglkrsyy+dpqps++few+lyeyein++da+alyrle PSME_00004294-RA 264 ELFDMYVLEGESMREWLFFDKPRQDFESGNRKQCSLPDYSGCGWHESRKQVIKDFGGLKRSYYIDPQPSTQFEWNLYEYEINDCDACALYRLE 356 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk+akgkv d+l+dlq++lg+l+a PSME_00004294-RA 357 LKMVCSKKNAKGKVGGDPLVDLQHQLGKLSA 387 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.330	2.8E-4	80	110	IPR012677	Nucleotide-binding alpha-beta plait domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MFRSDVPKSK VPFSVVPVFA TGSHFPTFGS VPMGYETESF TGTGSLSGSL YIDRWRIEVP 60 KSPILYVDSR PGLLFEYDNY VDYHMGAESG YVRFEQPEMV QKPRAAAVLA EDGGEQLPPN 120 LVEGLEVTSG LEGGQINFHQ DYIPAAQPIF TLTGEEETSP VFNGPHPGLC PPPAAFLGPK 180 CALWDCSRPA QGKKWCQDYC SDFHMTVASN EGAPGMRHVL RPGGIDLKDG PLFDALSAKT 240 QEKAVGIPEC EGAATAKSPW NAYELFDMYV LEGESMREWL FFDKPRQDFE SGNRKQCSLP 300 DYSGCGWHES RKQVIKDFGG LKRSYYIDPQ PSTQFEWNLY EYEINDCDAC ALYRLELKMV 360 CSKKNAKGKV GGDPLVDLQH QLGKLSAEFS WNGSNYTYSA STQVAPIGKS LLMGHECSMV 420 ILSKKQVDAM KLNDKRALTK YSTLYNYSVY FKEMIDALAT ISNAIIKGIM ESDANAFAPF 480 QQASCY

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MFRSDVPKSK VPFSVVPVFA TGSHFPTFGS VPMGYETESF TGTGSLSGSL YIDRWRIEVP  60
KSPILYVDSR PGLLFEYDNY VDYHMGAESG YVRFEQPEMV QKPRAAAVLA EDGGEQLPPN  120
LVEGLEVTSG LEGGQINFHQ DYIPAAQPIF TLTGEEETSP VFNGPHPGLC PPPAAFLGPK  180
CALWDCSRPA QGKKWCQDYC SDFHMTVASN EGAPGMRHVL RPGGIDLKDG PLFDALSAKT  240
QEKAVGIPEC EGAATAKSPW NAYELFDMYV LEGESMREWL FFDKPRQDFE SGNRKQCSLP  300
DYSGCGWHES RKQVIKDFGG LKRSYYIDPQ PSTQFEWNLY EYEINDCDAC ALYRLELKMV  360
CSKKNAKGKV GGDPLVDLQH QLGKLSAEFS WNGSNYTYSA STQVAPIGKS LLMGHECSMV  420
ILSKKQVDAM KLNDKRALTK YSTLYNYSVY FKEMIDALAT ISNAIIKGIM ESDANAFAPF  480
QQASCY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-128	PREDICTED: transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-126	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-127	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-118	vascular plant one zinc finger protein