PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004075-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 330aa    MW: 36032.4 Da    PI: 5.5876
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004075-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.9e-10141175236
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 
                       +e+kr+ r++ NReAA  sRqR+k +i+ Le k++
  PSME_00004075-RA 141 RESKRQLRLINNREAAFQSRQRRKSYIQGLESKCQ 175
                       799******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-6140204IPR004827Basic-leucine zipper domain
PfamPF001701.2E-7141176IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.05E-11144202No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-12144203No hitNo description
CDDcd147042.75E-13145196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADAAGSPII QDFQVGPGFE DLAQLDDWAG WDFFDEGFIL DDLIPGAEDD ACNLSALADH  60
ANARGSCSDF VEFEELLVNS SSSSSPNNSS NVVCENSHGA QTPEGTALTD DCIVDNKGAL  120
GSTHGFLPGI RAPGVQDHAN RESKRQLRLI NNREAAFQSR QRRKSYIQGL ESKCQMWENY  180
CNQLQGSIAF VCAENAVLRD ELSRCKRQKG SNGVSEPAVL KDSPPLESRS HLTTLVVVCH  240
MVGFHCLEWL LAALILLHLG GAVKPRSGNS TSQAEDEYKS SILRVSITVG EKRPVLEAFP  300
VTSSRALSSC RHRYRRLKEL PILSTSICHS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1171120.0BT117112.1 Picea glauca clone GQ03813_A18 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56660.12e-10basic region/leucine zipper motif protein 49