PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00003928-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 157aa MW: 17832.8 Da PI: 7.2721 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 87.6 | 1.7e-27 | 46 | 140 | 5 | 99 |
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 Ck+ +++C ++C++ f ++ +kfa+++++FGa nv+kl+++lp ++r +a++sl+yeA ar+++P G+vg+i++lq+q++ l++++ ++ PSME_00003928-RA 46 CKIEQKECMDNCTILYRFLCNDIHKFAILNQVFGACNVIKLIQDLPSNQRVEAIDSLIYEASARIEEPALGCVGIIQQLQRQISDLESQITST 138 ***************************************************************************************999887 PP DUF260 98 ke 99 ++ PSME_00003928-RA 139 EA 140 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.655 | 41 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-26 | 46 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MIFYVRFETR FLNNVAISVA VVVVIKMNNT NQKPRILSSS AAFHDCKIEQ KECMDNCTIL 60 YRFLCNDIHK FAILNQVFGA CNVIKLIQDL PSNQRVEAID SLIYEASARI EEPALGCVGI 120 IQQLQRQISD LESQITSTEA RVQKIHCQQA QLLAFLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-24 | 34 | 149 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-24 | 34 | 149 | 3 | 118 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P1U3 | 3e-49 | A9P1U3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-31 | LOB domain-containing protein 11 |