PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00003927-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 131aa MW: 14822.1 Da PI: 6.2294 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.4 | 9.7e-28 | 20 | 114 | 5 | 99 |
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 Ck+ +++C ++C++ f ++ +kfa+++++FGa nv+kl+++lp ++r +a++sl+yeA ar+++P G+vg+i++lq+q++ l++++ ++ PSME_00003927-RA 20 CKIEQKECMDNCTILYRFLCNDIHKFAILNQVFGACNVIKLIQDLPSNQRVEAIDSLIYEASARIEEPALGCVGIIQQLQRQISDLESQITST 112 ***************************************************************************************999887 PP DUF260 98 ke 99 ++ PSME_00003927-RA 113 EA 114 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.655 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.7E-27 | 20 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MNNTNQKPRI LSSSAAFHDC KIEQKECMDN CTILYRFLCN DIHKFAILNQ VFGACNVIKL 60 IQDLPSNQRV EAIDSLIYEA SARIEEPALG CVGIIQQLQR QISDLESQIT STEARVQKIH 120 CQQAQLLAFL L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-24 | 8 | 123 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-24 | 8 | 123 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P1U3 | 2e-49 | A9P1U3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 7e-32 | LOB domain-containing protein 11 |