PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00003925-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 131aa MW: 14840.2 Da PI: 5.7465 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.3 | 5e-28 | 20 | 113 | 5 | 98 |
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 Ck+ +++C ++C++ f +++ +kf +++++FGa nv+kl+++lp ++r +a++sl+yeA ar+++P G+vg+i +lq+q++ l++++ ++ PSME_00003925-RA 20 CKIEKKECMDNCTILYRFLSKDLQKFSILNQVFGACNVIKLIQDLPSNQRVEAIDSLIYEASARIEEPALGCVGIIEQLQRQISDLESQITSI 112 ***************************************************************************************999876 PP DUF260 98 k 98 + PSME_00003925-RA 113 E 113 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.853 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.0E-27 | 20 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MSNSNEKPRI PSLSTAFHDC KIEKKECMDN CTILYRFLSK DLQKFSILNQ VFGACNVIKL 60 IQDLPSNQRV EAIDSLIYEA SARIEEPALG CVGIIEQLQR QISDLESQIT SIEARVQKIH 120 CQQAQLLAFL L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-26 | 8 | 123 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-26 | 8 | 123 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P1U3 | 1e-47 | A9P1U3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 3e-31 | LOB domain-containing protein 11 |