PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00003776-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 360aa MW: 39154.2 Da PI: 8.9218

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00003776-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.1	2e-13	86	130	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky PSME_00003776-RA 86 PWTEEEHRMFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 130 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.515	5	18	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	18.444	79	135	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-17	81	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-17	82	134	IPR006447	Myb domain, plants
SMART	SM00717	4.5E-10	83	133	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-11	85	129	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-10	86	130	IPR001005	SANT/Myb domain
CDD	cd00167	5.73E-9	86	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MSRSCSQCGH NGHNSRTCVG NGVMLFGVRL TDGPMRKSAS MSNLSNLAQY DHSDPAEVGV 60 EGFDGYVSDD FVHSSSNARE RKRGVPWTEE EHRMFLVGLQ KVGKGDWRGI SRNFVKTRTP 120 TQVASHAQKY FLRQSNMNRR RRRSSLFDIT TDTFLSLPVE EDLVPGSGNP PPFSSHLSLG 180 QNSSFPVPEG GNFAIPVTSF PVPLSHVVLP GLSVGKSQES GKQDITPMDC SENPAPSPLA 240 FTSEAAMDVS VSHPKFMDVR PPLQYRIWNP ALAFPSVEIS ASAGSKLVKP IPIIPTPPLK 300 TTESTKKVAI SSQNPVMEPS PLSLKLSEQP KRHSAFQSMT SLSSHELESQ GNISNVISVA

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MSRSCSQCGH NGHNSRTCVG NGVMLFGVRL TDGPMRKSAS MSNLSNLAQY DHSDPAEVGV  60
EGFDGYVSDD FVHSSSNARE RKRGVPWTEE EHRMFLVGLQ KVGKGDWRGI SRNFVKTRTP  120
TQVASHAQKY FLRQSNMNRR RRRSSLFDIT TDTFLSLPVE EDLVPGSGNP PPFSSHLSLG  180
QNSSFPVPEG GNFAIPVTSF PVPLSHVVLP GLSVGKSQES GKQDITPMDC SENPAPSPLA  240
FTSEAAMDVS VSHPKFMDVR PPLQYRIWNP ALAFPSVEIS ASAGSKLVKP IPIIPTPPLK  300
TTESTKKVAI SSQNPVMEPS PLSLKLSEQP KRHSAFQSMT SLSSHELESQ GNISNVISVA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT101441	0.0	BT101441.1 Picea glauca clone GQ01304_K02 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272144.1	1e-84	PREDICTED: transcription factor MYB1R1-like
TrEMBL	B8LLJ2	0.0	B8LLJ2_PICSI; Uncharacterized protein
STRING	XP_010272144.1	5e-84	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-65	MYB_related family protein