PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00003147-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 131aa    MW: 14626.8 Da    PI: 4.639
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00003147-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.41.4e-1215412551
           G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQ 51
                       +A+Pk+ilelm+v+gLt+e+v+SHLQ
  PSME_00003147-RA 15 AEAVPKRILELMNVQGLTRENVASHLQ 41
                      47************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-10741IPR009057Homeodomain-like
SuperFamilySSF466899.32E-51141IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-111542IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MLFSSGITEL NAMDAEAVPK RILELMNVQG LTRENVASHL QFLSDVESIE ISSPWLIHNS  60
LIGDGVYLSS WETYANVPDM SKVQNNLALI FQQKTSVALI TVPDLEQQID MEKNKLKNYK  120
TKLSNGPSML S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.12e-09response regulator 14