PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00001983-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 319aa MW: 35789.3 Da PI: 5.0894 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 404.7 | 1.9e-124 | 96 | 312 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkc+lwdc+rpaqg++w+qdycs fh tla neg+pg++pvlrp+gidlkdg+lfaalsak+q k vgipecega+takspwna PSME_00001983-RA 96 PPPAAFLGPKCTLWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPGMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAVTAKSPWNAY 188 89******************************************************************************************* PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdk r afesgnrkqrs+pdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+a yrle PSME_00001983-RA 189 ELFDMYVLEGESMREWLFFDKLRWAFESGNRKQRSFPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACAPYRLE 281 ********************************************************************************************* PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00001983-RA 282 LKTVCSKKNTKGKVGGDPLVDLQHQLGKLSA 312 *****************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MATCTNIGEG LHQNSYPQTS VQLPTNIEHQ ENNNYVQTSE QLPPNLVEGL EVTFGLEGGQ 60 INFHQDYIPT AKPIFTLTGE EETSPIFNGP QPGLCPPPAA FLGPKCTLWD CSRPAQGTKW 120 CQDYCSDFHM TLASNEGAPG MRPVLRPGGI DLKDGPLFAA LSAKTQEKAV GIPECEGAVT 180 AKSPWNAYEL FDMYVLEGES MREWLFFDKL RWAFESGNRK QRSFPDYSGR GWHESRKQVI 240 KDFGGLKRSY YMDPQPSTQF EWHLYEYEIN DCDACAPYRL ELKTVCSKKN TKGKVGGDPL 300 VDLQHQLGKL SAEFSWVAK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260370.1 | 1e-132 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-121 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A1U8A0G4 | 1e-130 | A0A1U8A0G4_NELNU; transcription factor VOZ1 | ||||
STRING | XP_010260370.1 | 1e-131 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-123 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|