PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00001974-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C3H

Protein Properties

Length: 352aa MW: 39311.2 Da PI: 7.898

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00001974-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.4e-07	9	28	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++ +t +Ck+G +CkF+H++ PSME_00001974-RA 9 HHVKTRQCKFGITCKFHHPQ 28 6779**************97 PP
2	zf-CCCH	25.2	2.9e-08	335	351	3	19
S---SGGGGTS--TTTT CS zf-CCCH 3 telCrffartGtCkyGd 19 +++C+f++rtG+CkyG+ PSME_00001974-RA 335 QPECQFYMRTGYCKYGS 351 799*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	8.061	2	29	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	9	28	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.61	332	352	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-5	335	351	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MDNEKEFSHH VKTRQCKFGI TCKFHHPQPV GESITIHGPS SYYPISPSLS IPSPQPYARG 60 ITTWPVSRTP LMTNPHLHSP STYVHLVISQ GMMSVPSWNP FPAQVGSITS RDVGQQAPGT 120 GLFYGPRYQT DEMNHTMQGA LSSYSSRSAS MGILSSNTQM EHTFPERHGQ PECQFYMRTG 180 YYKYGSTSSR DRTIPLTSCA LNPLGLPLRS DNKSLVSLVN FTIHSQLEDQ LQFLDLLHVI 240 QLALLCQYPV LNHIQDNNMT SFKDATNAQV GSITSHDVGQ QAPGTGLFYG LRYQTGEMNH 300 SMQGALSSYS SRYSSMGLPS SNTQMEHMFP ERHGQPECQF YMRTGYCKYG ST

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MDNEKEFSHH VKTRQCKFGI TCKFHHPQPV GESITIHGPS SYYPISPSLS IPSPQPYARG  60
ITTWPVSRTP LMTNPHLHSP STYVHLVISQ GMMSVPSWNP FPAQVGSITS RDVGQQAPGT  120
GLFYGPRYQT DEMNHTMQGA LSSYSSRSAS MGILSSNTQM EHTFPERHGQ PECQFYMRTG  180
YYKYGSTSSR DRTIPLTSCA LNPLGLPLRS DNKSLVSLVN FTIHSQLEDQ LQFLDLLHVI  240
QLALLCQYPV LNHIQDNNMT SFKDATNAQV GSITSHDVGQ QAPGTGLFYG LRYQTGEMNH  300
SMQGALSSYS SRYSSMGLPS SNTQMEHMFP ERHGQPECQF YMRTGYCKYG ST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104338	1e-177	BT104338.1 Picea glauca clone GQ02809_C21 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9S646	1e-63	A0A0C9S646_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_15578_2223 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	9e-28	zinc finger protein 1