PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001828-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 668aa    MW: 76239.9 Da    PI: 6.696
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001828-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.72e-15120185267
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                       W  +e+l L+++ +e++ ++r+++l+++ We+vs+k++e g++rs+k Ckek+e+ n   +k k+g
  PSME_00001828-RA 120 WATEEILNLLRVHSELHLKFRDSNLQAAPWEDVSRKLAELGYHRSAKACKEKIEQANLTSEKAKDG 185
                       ******************************************************988766666665 PP
2trihelix98.65.3e-31353438186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+k ev+aLi++r+++e+++++   k+plW+evs+ m+++gf +rs+k+Ckekwen+nk+++k+k+++kkr +e+ +tcpyf+ql+
  PSME_00001828-RA 353 RWPKPEVQALIRLRSNLESKFQEPGPKGPLWQEVSAGMASQGFtNRSAKRCKEKWENINKYFRKTKDSMKKR-PENAKTCPYFHQLD 438
                       8******************************************99**************************8.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.773112171IPR017877Myb-like domain
SMARTSM007172.9116178IPR001005SANT/Myb domain
PfamPF138375.9E-11118185No hitNo description
SMARTSM007175.6E-4350413IPR001005SANT/Myb domain
CDDcd122032.22E-27352418No hitNo description
PfamPF138372.2E-21352439No hitNo description
PROSITE profilePS500907.224353411IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MQSGGQYGIH DIQQLMMDRG PPPRMFALSP DMLPQAMKPP RLHPQSTPHL FMPFPLDQHY  60
QQSLATHHAQ QQAMKEQISL GDDSSENQSS FANRTAIQVE TEDDDDGIEG EDDEDNSDGW  120
ATEEILNLLR VHSELHLKFR DSNLQAAPWE DVSRKLAELG YHRSAKACKE KIEQANLTSE  180
KAKDGKSFMQ FGELEAVYNG GSRVNNGGTP NATLHEEIPA KSEQQNKKKR KRKHLASIKT  240
FLENLVKQLL ENQEALHGKF LEAIERRDQE RITREEAWKR QEMARLTRET ELRAQEHALA  300
STREAAIVAF LQKITGQDLK LPEAPVPTHG TETQEDHQAA CMDKDLSDPN GKRWPKPEVQ  360
ALIRLRSNLE SKFQEPGPKG PLWQEVSAGM ASQGFTNRSA KRCKEKWENI NKYFRKTKDS  420
MKKRPENAKT CPYFHQLDVL YRKGIISSPN KCNRVDQNSN SSDAMLEDQD HGLESNHKDD  480
LRDHIQASRS DSEHIISVIP AEGEKIPPAN NRDNVYFFQS PDPVDHGHQM TKLKQNLPEN  540
NHNTSKSASP NVESGTTTRN AGIFWTGNSK TASKMERMVK DMLEAQQQQK KFFEVFERRE  600
QNQNQHPHQH QQHQELRDQE EFSCQQNELK LIQERSQSAT QSALMALVDK LTAEIGGEYS  660
IHVPSAKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226232KKKRKRK
2227232KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1117311e-159BT111731.1 Picea glauca clone GQ03302_O03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S5C51e-141A0A0C9S5C5_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12946_2942 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-60Trihelix family protein