PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00001691-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 242aa MW: 27476.4 Da PI: 4.4824

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00001691-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.3	1.6e-32	6	92	1	86
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGf FhPtdeelv +yLk+kv+g+k+el ++++evd+yk+ePwdLp k ++ +++ +w+fF++rd+ky++g+r+n at++gyWkat PSME_00001691-RA 6 LPPGFGFHPTDEELVAYYLKRKVQGHKIEL-DIFPEVDLYKCEPWDLPdKiCIPSKDLQWHFFCPRDRKYPNGSRTNGATEAGYWKAT 92 79**************************.99***********5346777888**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-43	4	123	IPR003441	NAC domain
PROSITE profile	PS51005	32.866	6	163	IPR003441	NAC domain
Pfam	PF02365	2.5E-15	7	101	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MAPISLPPGF GFHPTDEELV AYYLKRKVQG HKIELDIFPE VDLYKCEPWD LPDKICIPSK 60 DLQWHFFCPR DRKYPNGSRT NGATEAGYWK ATDWVMHEYR LDESSQGAAG LQDSFVLCRV 120 VKKNGLETKS DDQSIAQTEN NDSSCAKNNT FPDNLALTSY TENQSKESSS PILQEDEINK 180 SLRFSKPETP SATFNDMTED SNAIERWLDV LLDDPDQNVS LTSPVESENN TKVQWKTNSG 240 VR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-36	1	124	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-36	1	124	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-36	1	124	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-36	1	124	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	8e-36	1	124	15	169	NAC domain-containing protein 19
3swm_B	8e-36	1	124	15	169	NAC domain-containing protein 19
3swm_C	8e-36	1	124	15	169	NAC domain-containing protein 19
3swm_D	8e-36	1	124	15	169	NAC domain-containing protein 19
3swp_A	8e-36	1	124	15	169	NAC domain-containing protein 19
3swp_B	8e-36	1	124	15	169	NAC domain-containing protein 19
3swp_C	8e-36	1	124	15	169	NAC domain-containing protein 19
3swp_D	8e-36	1	124	15	169	NAC domain-containing protein 19
4dul_A	8e-36	1	124	12	166	NAC domain-containing protein 19
4dul_B	8e-36	1	124	12	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010528600.1	2e-61	PREDICTED: NAC domain-containing protein 86 isoform X2
Refseq	XP_029124457.1	8e-62	NAC domain-containing protein 86-like
Swissprot	Q9FFI5	1e-59	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0C9QTT7	8e-75	A0A0C9QTT7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10143_3084 transcribed RNA sequence
STRING	XP_010528598.1	9e-61	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	5e-62	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]