PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001422-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 846aa    MW: 92976.4 Da    PI: 4.8748
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001422-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3612.1e-19597693295
                       EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       +kvl++sdv+++gr+vlpkk ae h  +++ + ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++  ++ +
  PSME_00001422-RA 597 QKVLKQSDVGNLGRIVLPKKEAEIHlpELEARDGISIAMEDiVTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--SDtK 686
                       79********************999**999999********9999*******99777777777777.********************..4448 PP

                       EE..EEE CS
                B3  89 efelvvk 95 
                       +++++++
  PSME_00001422-RA 687 TGKYMIR 693
                       8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-26592698IPR015300DNA-binding pseudobarrel domain
CDDcd100152.76E-33594695No hitNo description
SuperFamilySSF1019361.63E-22595692IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.926596698IPR003340B3 DNA binding domain
SMARTSM010196.1E-19596698IPR003340B3 DNA binding domain
PfamPF023621.6E-15597693IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
RNMDTSSTVP TQIAETNEIM KDTSVEAEDL KGRIEMKEQS SREKLKEDEE KTEMATESCD  60
NALAKAEELI PPSSPEWTDY ECTETDDLLD AARIFDCVNL PVFEELQDLG PAVPATSSLG  120
SATTSSSSAS ASSPSSSSWI PRNIKQEAEG VERHSSTCAA PGTPSGGDQD VTLCGTDSAT  180
SCSYNQSSMA PALQVNEHHN AECLYSDPDQ SEKIDVLEEL QNLDLLDGSD VWDPLFIVPD  240
SSVLEGLQSS LDCGSFEERA DDSSSEELPM VFFEWLKSNR DAISPEDLRS IKLKRSTIET  300
AAKHLGGGKK GMLHLLKLIL AWVQNHHLQR KRKLYSSTHQ RVLNEAGMCT GTPASYNFPG  360
MDHFNPWNGA GMVQQQDNRQ NGLYNDISPS CNVPVYLNSG DPSMFGAMQG LPGSVDAIHA  420
AKYRRIPLDD GAAGSFRDVP NLMNGNSGFT NPNDCQTMLQ QSAVFNGNPW PAQMTAMLHQ  480
GSQNQQHAYC NAALQASQDH KYRFAASQSH LDYMNYRSPN PAASTKEARK NRMARQRRSM  540
AHHHHHQNRQ WSSSTAMPPQ QADPMNLTLM QYQRQTFMQT DRRQGWKPEK HLKFLLQKVL  600
KQSDVGNLGR IVLPKKEAEI HLPELEARDG ISIAMEDIVT SRVWNMRYRF WPNNKSRMYL  660
LENTGDFVRS NGLQEGDFIV IYSDTKTGKY MIRGVKVPRS DATTSASAAA ATPTTTTKSA  720
SGSCLIPDGE DAAAAAARVL KIGKSYGVPT SQAVGVTFAD SMADASSSSV SDATHSCSEG  780
DPFLRDMINQ FSPTKGPEND NVPNLERFPS LDSGDLMMEE ILDLVESPDM ADPVLKSPDN  840
IGESKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-365927011110B3 domain-containing transcription factor FUS3
6j9b_D3e-365927011110B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1755760.0AF175576.1 Picea abies transcription factor viviparous 1 (vp1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ9FVK10.0Q9FVK1_PICAB; Transcription factor viviparous 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-74B3 family protein