PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001380-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 519aa    MW: 57773.9 Da    PI: 6.021
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001380-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-53892143128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       pGfrFhPtdeelv++yL+kk++++++++ ++i+ev+ +++ePwdLp+k+k +ekewyfF  rd+ky+tg r+nrat++gyWk+tg+d+ev+s+
  PSME_00001380-RA  89 PGFRFHPTDEELVCYYLTKKIQDTTFSC-SAIAEVNFNNCEPWDLPAKAKIGEKEWYFFGLRDRKYPTGLRTNRATEAGYWKTTGNDREVFSS 180
                       8***************************.88***************99999****************************************98 PP

               NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++lv +kktLvfykgrapkg+kt+Wvmheyrl
  PSME_00001380-RA 181 qSSALVAMKKTLVFYKGRAPKGKKTNWVMHEYRL 214
                       56677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.11101.0E-121372IPR013830SGNH hydrolase-type esterase domain
PROSITE profilePS5100556.59687239IPR003441NAC domain
SuperFamilySSF1019411.27E-5987239IPR003441NAC domain
PfamPF023654.7E-2789214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSMVLGMVQL VESTVPVLFV FGDSLLDIGN NNNMSTLVNA TSYGNYPSGT LGGRFSNGPV  60
FTDFVGGDIE FRMEFTLNQM NDALQAEDPG FRFHPTDEEL VCYYLTKKIQ DTTFSCSAIA  120
EVNFNNCEPW DLPAKAKIGE KEWYFFGLRD RKYPTGLRTN RATEAGYWKT TGNDREVFSS  180
QSSALVAMKK TLVFYKGRAP KGKKTNWVMH EYRLQSKFSY QPLLKQCNDE WVVCRIFEKS  240
AKAKRRSIGR MSRKGFLDLL VPCSPSFPSP LETPCNTNSA NDHETRISSE SGSGTCEKAH  300
YVSCSIPIEP KDNVRGHHLQ QFECGSSSNF SDSSDQLSEM ARLMQQSSYI HDLRIDMNAG  360
SFFPVSNMRG YQISAILDQE LKGLLPARVC NQQMPLACDS SNLGFSTDAY FSALPCSNEV  420
SKAPVGKSAG NLLESFSSSC VHHETLSNNN TMEANNSVNR FQWSNDGLSQ NIFAQPLEMA  480
VGPTCSTADM NDKMTSVAYN LLDRSLDQLD SSATPPFHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-508924519171NO APICAL MERISTEM PROTEIN
1ut4_B2e-508924519171NO APICAL MERISTEM PROTEIN
1ut7_A2e-508924519171NO APICAL MERISTEM PROTEIN
1ut7_B2e-508924519171NO APICAL MERISTEM PROTEIN
4dul_A2e-508924519171NAC domain-containing protein 19
4dul_B2e-508924519171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG0LD341e-112G0LD34_GINBI; NACa protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.11e-80NAC family protein