PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001127-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 695aa    MW: 76703.8 Da    PI: 4.4389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001127-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.34.9e-56111391129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtdeel v+yLk++v g++l+l ++i+evdiyk+ePwdLp k  +++++ ewyfFs++d+ky++g+r+nrat +gyWkatgkd++
  PSME_00001127-RA  11 LPPGFRFHPTDEELTVYYLKRRVCGRPLKL-DAIAEVDIYKCEPWDLPeKsLLQSRDLEWYFFSPKDRKYPNGSRTNRATGKGYWKATGKDRP 102
                       79****************************.99**************95335566777*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ++s ++++vg+kktLvfy+grap+ge+t+Wvmheyrle
  PSME_00001127-RA 103 ITS-NTRTVGMKKTLVFYTGRAPRGERTNWVMHEYRLE 139
                       ***.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-673161IPR003441NAC domain
PROSITE profilePS5100562.28511161IPR003441NAC domain
PfamPF023651.9E-2812138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MMKTSKKRVS LPPGFRFHPT DEELTVYYLK RRVCGRPLKL DAIAEVDIYK CEPWDLPEKS  60
LLQSRDLEWY FFSPKDRKYP NGSRTNRATG KGYWKATGKD RPITSNTRTV GMKKTLVFYT  120
GRAPRGERTN WVMHEYRLED NELRHSDVVQ DSYVLCRLFE KSGPGPKNGE QYGAPFREED  180
WSEHTNEDGS TLLTVTDASP LAIQVSGDNL DADNEDNIFS KQDPVVAIQV SGDNLDADNE  240
DNIFSKQDPV VENSFVPDQP AFFADQLEVP SGNSIFPDDN DELGRLLFAC LAAPENSSQL  300
HHLNYMQNED DIFPNGSSMC TMMQEGTRIL SEPEDISILF DGQHAGANIS QGDVCNLPGQ  360
IYMENKEELI DSFLQDIPAS SSSLEGDFLE INDLASELET NTSGLGSFHE LNEFFDASDN  420
LLDFSDAPIM LNEISDPIEG ISMGYAESYR YNMLPEASNV YVEPDLAQVG DNLASQFSAE  480
GQMMDISSNF FVSGEVSDTG LLVPPIGVNE YTTVTQHMNA AMLRQQDYNE STPGSLSRFM  540
NILGSIDSLP ASAAEYPSKK GSLSKQPSSG SMHVGAANAH LTAVTMTCKC SAIQGHKKGD  600
ATGSCTCSSD VSYGIMKSSI LANSSIINPV GLKSNISKPS EKTAVSKPLE KTTVRNMRNG  660
FLFVFFLGAI SALVWLLMLG ATVKFGKYIC RLIFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-6231617168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1028560.0BT102856.1 Picea glauca clone GQ0201_L21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482EQA90.0A0A482EQA9_9SPER; NAC transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.17e-91NAC domain containing protein 2