PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00000341-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 499aa    MW: 56692.5 Da    PI: 8.9289
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00000341-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.59.5e-10124190267
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikeg 67 
                       W++  + +L+   ++m  +++rg+l k++W ++++++ ++   + s +qCk kw+ l+k y k k +
  PSME_00000341-RA 124 WPNTAIDVLLVKFEDMCFNVSRGRLGKTHWGQIADAVnAACSANYSGVQCKYKWNRLKKSYNKAKLH 190
                       9************************************45556688*****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.9E-10124204No hitNo description
PRINTSPR019116.3E-23349366IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
Gene3DG3DSA:3.90.190.108.4E-30349492IPR029021Protein-tyrosine phosphatase-like
SuperFamilySSF527994.81E-34349492IPR029021Protein-tyrosine phosphatase-like
PfamPF031622.8E-55350497IPR004861Protein-tyrosine phosphatase, SIW14-like
PRINTSPR019116.3E-23386399IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019116.3E-23405419IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019116.3E-23422436IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004725Molecular Functionprotein tyrosine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MGDPVKTPQL IEEPSTTTSP HRQQHNNKKG SSSSILEPES MTPTHYNLNA VQQSPSATSS  60
QYHYQQHHLR SKQESIACIK SVLQNLMASP SVQSQNPNDN RPPLSLKRKD MTESSSRAQK  120
EALWPNTAID VLLVKFEDMC FNVSRGRLGK THWGQIADAV NAACSANYSG VQCKYKWNRL  180
KKSYNKAKLH GETSRFLFYK RVERIVHRAS GQKLHEEEEE EEEEMASEDD DVDSICEAAS  240
IESKPSSASM SATEDDDVHR RPKKRGVTLK SFGYKMEQSM NNLAQSMKSI EKTRTDKMKK  300
LLDTQLEITS ILVQNNKMLK RSDGVAAGRS RVMNEAELIC RQQGGIASFV PPLNFAMVDK  360
GVYRSGFPNH TNFPFLKTLK LRSIIYLCPE PYPGVNMEFL RVEEIRIFHI GIKDYKEPMI  420
GISEDDVRDA LKFLLDIRNH PVLIHCKTGK RPTSCLVGCL RKIQNWCLAS VFDEYQRFSG  480
TKTQVPDLQF IERINISNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xri_A5e-633504983151At1g05000
1xri_B5e-633504983151At1g05000
2q47_A5e-633504983151Probable tyrosine-protein phosphatase At1g05000
2q47_B5e-633504983151Probable tyrosine-protein phosphatase At1g05000
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1147690.0BT114769.1 Picea glauca clone GQ03601_N05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AEE50.0D5AEE5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-07sequence-specific DNA binding transcription factors