PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00000340-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 415aa    MW: 47206.2 Da    PI: 8.4103
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00000340-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.15.4e-0937105269
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegek 69 
                       W++  + +L+   +++  +++rg+l k++W ++++++ +    + s +qCk kw+ l+k y k k + +
  PSME_00000340-RA  37 WPNTSIDVLLLKFEDTCFSVSRGRLGKTHWGRIADAVNAVCSaNYSGVQCKYKWNRLKKSYNKAKLHGE 105
                       99999999999999***********************88776377*****************9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-939117No hitNo description
Gene3DG3DSA:3.90.190.102.2E-28266409IPR029021Protein-tyrosine phosphatase-like
PRINTSPR019118.3E-26266283IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
SuperFamilySSF527991.15E-31266408IPR029021Protein-tyrosine phosphatase-like
PfamPF031621.9E-56267413IPR004861Protein-tyrosine phosphatase, SIW14-like
PRINTSPR019118.3E-26303316IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019118.3E-26322336IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019118.3E-26338352IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004725Molecular Functionprotein tyrosine phosphatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MASPSIQCQK TNENRLPLAL KRIETTKSSR AQKEALWPNT SIDVLLLKFE DTCFSVSRGR  60
LGKTHWGRIA DAVNAVCSAN YSGVQCKYKW NRLKKSYNKA KLHGETSRFM YYKRVERIVH  120
KAMGEKLHED EEEEGEEEEE EMASEDDGVD SICEAASIES KPSSASMSAT EDDDEHRRPQ  180
KRGVTLKSFG HKMEQSMNNL AQSMKDIEKT RTDKMMKLLD AQMEITSILV QSNKRLKPSD  240
GVAAGRAWAM NEAGLMCQQQ GCVPSFVPPL NFAMVDKGVY RSGFPNHANF PFLKTLKLRS  300
IIYLCPEPYP EVNMKFLRAE EIKIFQFGII GYKEIMGISE DGIRDALKIL LDIRNHPVLI  360
HCKTGKHPTS CLVGCLRKIQ NWCLASVFDE YQRFAGIKTR VSDLQFIERF NIPNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xri_A6e-682674123149At1g05000
1xri_B6e-682674123149At1g05000
2q47_A6e-682674123149Probable tyrosine-protein phosphatase At1g05000
2q47_B6e-682674123149Probable tyrosine-protein phosphatase At1g05000
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1196560.0BT119656.1 Picea glauca clone GQ04108_H03 mRNA sequence.
GenBankEF6775460.0EF677546.1 Picea sitchensis clone WS02770_G18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNY60.0B8LNY6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.18e-07Trihelix family protein