PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00000011-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 458aa    MW: 48873.6 Da    PI: 8.3929
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00000011-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.15.3e-20311374164
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                       e+elkr+rrkq+NRe+A+rsR++K+ e+eeL+ kv++L+aeN++L++el+ +  e++kl se+e
  PSME_00000011-RA 311 ERELKRQRRKQSNRESAKRSRRKKQLECEELTAKVDTLTAENTTLRNELNLIGLESEKLASENE 374
                       89**********************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.9E-276102IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.2E-18122251No hitNo description
Gene3DG3DSA:1.20.5.1707.2E-14306370No hitNo description
PfamPF001701.2E-17311373IPR004827Basic-leucine zipper domain
SMARTSM003381.0E-18311375IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.99313376IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-10314364No hitNo description
CDDcd147029.40E-20316362No hitNo description
PROSITE patternPS000360318333IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSELAMGTGE GGTQSKATKS YSSLQEQPTT PAYPEWAAAY QAYYGSGVTP PPPYFASPVA  60
SGPTPPPPYM WGGQTLMSPY GTAPPYAAMY THGGIYTHPS LPPISVPSGT ETEAKSLLGK  120
SRNSIKKVKG NLEKLQIVST KGGNGKATSS STNGAFSQSG GSGSEGSTEG SEEDNSQNGC  180
ETGRKRSLEP LTMNGTSATD TITLACNAQA EAKATMNRSA MGLVPPAPIP GMAAANLPTT  240
NLNMGINVWN QFAPGSVTPV KGRRETTNIV PALVPTTAQL MPGRDGVPSE LLVQINGLKY  300
VELNELVKQD ERELKRQRRK QSNRESAKRS RRKKQLECEE LTAKVDTLTA ENTTLRNELN  360
LIGLESEKLA SENELLKEKL MILQGDNRVG DSERNGPRRI QSQFMQPGGN DYPHVLSKIS  420
NSSSSQRDEQ RESEISDLTG KGHAVLESNA RSDAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317333RRKQSNRESAKRSRRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1042121e-131BT104212.1 Picea glauca clone GQ02807_L01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S9I51e-163A0A0C9S9I5_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_7691_2463 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.13e-48basic region/leucine zipper transcription factor 16