PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf15691g00004.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 565aa MW: 63664.1 Da PI: 7.5478

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf15691g00004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.1	5.2e-12	71	138	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY+eYAk++GF +r+ + ++ k +f C k g r+ ++ C+a+l+v+ + ++kw+vtk ++eHn Peinf101Scf15691g00004.1 71 FYDEYAKRMGFPTRVYQYNRV-------KTDFLCDKDGLRKVFGES--------------CDAMLRVEFKGQNKWVVTKYVKEHN 134 9*************98887.......678****9998777..............********************* PP FAR1 87 Hela 90 H+l+ Peinf101Scf15691g00004.1 135 HSLV 138 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-8	71	138	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	2.5E-9	282	320	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.066	286	322	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-6	297	324	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
WFTCSGMDVE VINVEEGNMH QQGGISDDGD DEPSESGEAN VIGRSNAPDR DEVVEPRMGM 60 VFHSEDRAKI FYDEYAKRMG FPTRVYQYNR VKTDFLCDKD GLRKVFGESC DAMLRVEFKG 120 QNKWVVTKYV KEHNHSLVSP NKVHYQRPHR HLAVTKKNVP ENNPGVGIVP SGVMYVSVDG 180 NRIPVDINRG AKHTRPTESD QAYERALENS FEKEIEADFN TMCTSPQLRT PSPMEKQAAT 240 LYTKKIFLKF QEELVETFVY TANRIDGDST LSTFRVAKFE DDQKAYIVSL HISELKANCS 300 CQMFECSGIL CRHILTVFTV TNVLTLPSHY ILKRWTINAK CGAEIDEHVL RHDTESMAQR 360 YNSLCREAIR FAEEGSVAQE TYNAALGALK EGGKKVGLAK RNVAKVSPPS SQVSGVGYDN 420 RRTSTSASEM TPLLWPRQDE MTKRLNLNDS GIPARTVADS NAQRMAPVSL HRDDAHTDNT 480 ISQVKVILPC LKSMTWVMEN KTSTPANRVA VINLKLQDYN KTPSRESEVK FQLSRVTLEP 540 MLKSMAYISE QLSTPANRVA VINLK

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

WFTCSGMDVE VINVEEGNMH QQGGISDDGD DEPSESGEAN VIGRSNAPDR DEVVEPRMGM  60
VFHSEDRAKI FYDEYAKRMG FPTRVYQYNR VKTDFLCDKD GLRKVFGESC DAMLRVEFKG  120
QNKWVVTKYV KEHNHSLVSP NKVHYQRPHR HLAVTKKNVP ENNPGVGIVP SGVMYVSVDG  180
NRIPVDINRG AKHTRPTESD QAYERALENS FEKEIEADFN TMCTSPQLRT PSPMEKQAAT  240
LYTKKIFLKF QEELVETFVY TANRIDGDST LSTFRVAKFE DDQKAYIVSL HISELKANCS  300
CQMFECSGIL CRHILTVFTV TNVLTLPSHY ILKRWTINAK CGAEIDEHVL RHDTESMAQR  360
YNSLCREAIR FAEEGSVAQE TYNAALGALK EGGKKVGLAK RNVAKVSPPS SQVSGVGYDN  420
RRTSTSASEM TPLLWPRQDE MTKRLNLNDS GIPARTVADS NAQRMAPVSL HRDDAHTDNT  480
ISQVKVILPC LKSMTWVMEN KTSTPANRVA VINLKLQDYN KTPSRESEVK FQLSRVTLEP  540
MLKSMAYISE QLSTPANRVA VINLK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776133.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X3
Swissprot	Q9ZVC9	1e-159	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A200Q080	0.0	A0A200Q080_9MAGN; FAR1 DNA binding domain
STRING	XP_009776131.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-147	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]