PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf11273g00045.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 282aa    MW: 30974.2 Da    PI: 8.2094
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf11273g00045.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.9e-13555146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                              + +WT eE+e l+ +++++G+g WktI +  +      +R+  ++k++w++
  Peinf101Scf11273g00045.1  5 KVKWTREEEEALKAGIAKHGTGKWKTILNDPQfasllSNRSNIDLKDKWRN 55
                              579**********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.235161IPR017930Myb domain
SuperFamilySSF466893.3E-16259IPR009057Homeodomain-like
SMARTSM007172.4E-7459IPR001005SANT/Myb domain
PfamPF002493.1E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-14556IPR009057Homeodomain-like
CDDcd116601.15E-21657No hitNo description
SMARTSM005264.8E-14111176IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467856.53E-14111186IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-13112178IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.903113181IPR005818Linker histone H1/H5, domain H15
PfamPF005383.1E-10115175IPR005818Linker histone H1/H5, domain H15
CDDcd000733.30E-11115182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGNPKVKWTR EEEEALKAGI AKHGTGKWKT ILNDPQFASL LSNRSNIDLK DKWRNMNCTA  60
AQGPKDNSGV ARARPVTIGA LGPSTAQRSV PITSVSKNEA VDDSPKSPQE GKNAPTYSDM  120
IFEALSSMKG SNGSDLGAIV GFIEHRHEVP QNFRKSLSSK LRRLVLQGKL ERVQNCYKIK  180
GAILETKTPT LKQMDVQPRP PPSSAVKFSC ETMEEAARIA VYHVLDADKK SLLAAEAVKD  240
AERVAEMAED AESMLQLIEE IYEQCRSILD KNCGHPEASE IT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616026.11e-139PREDICTED: telomere repeat-binding factor 4
RefseqXP_016510058.11e-139PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A1S4D9K51e-137A0A1S4D9K5_TOBAC; telomere repeat-binding factor 4-like
STRINGXP_009616026.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-58MYB_related family protein