PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf07361g00035.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 218aa    MW: 24148.3 Da    PI: 4.471
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf07361g00035.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-188521256
                              HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              ++ Le+ Fe ++++  +++ +LA+klgL+ rqV vWFqNrRa++k
  Peinf101Scf07361g00035.1  8 VHLLEKSFETENKLEPDRKSQLAQKLGLQPRQVAVWFQNRRARWK 52
                              678*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.807154IPR001356Homeobox domain
SMARTSM003894.1E-11158IPR001356Homeobox domain
SuperFamilySSF466893.81E-17765IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-20761IPR009057Homeodomain-like
PfamPF000462.4E-15852IPR001356Homeobox domain
CDDcd000861.87E-16855No hitNo description
PRINTSPR000312.0E-62534IPR000047Helix-turn-helix motif
PROSITE patternPS0002702952IPR017970Homeobox, conserved site
PRINTSPR000312.0E-63450IPR000047Helix-turn-helix motif
PfamPF021831.8E-175496IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEILFSEVHL LEKSFETENK LEPDRKSQLA QKLGLQPRQV AVWFQNRRAR WKTKQLERDY  60
DHLKSSYDSL LSDFDSITKD NDKLKAEVAS LLEKLQGKVV GSGAGTSEKS EGLEVDAAMT  120
LQVKAEDRLS SGSGGSAVVD EHSPQLVDSG DSYVHTGHEE YAGVGGYNIP PPVDGLNSEE  180
DDGSDDGSCH GYFSNVFVAA EEHHHHEEEG EPLGWFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338548.11e-120PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022833e-67HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLM0ZIA11e-119M0ZIA1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000013221e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-52homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]