PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf05168g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 293aa MW: 33770.7 Da PI: 9.3443 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.4 | 1.3e-11 | 6 | 45 | 5 | 44 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 + r+ tf kR++g+ KK +E +LC+++ ++i++++++ Peinf101Scf05168g00003.1 6 KEKARNATFKKRKEGLKKKLHEFTTLCNVNGCMIMYGPKQ 45 5567999******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.2E-4 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.732 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-12 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.4E-13 | 5 | 45 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MELMSKEKAR NATFKKRKEG LKKKLHEFTT LCNVNGCMIM YGPKQSNGSN SEPEIWTNNS 60 TTSKSSQEEE IQNLIDEYKK SSLVTRSTKT FGLSDYFTDR NKNIEKELIR LRKMNMEKKY 120 PCWLKFMDHF SEFKLRELIS FLDGKVEKVK SRIDFLKGNM NIVDEYYMKA APEGVELSRL 180 TNFSDNVSPL MVQGGSELGG FMNNHYEQAI DPYWQFNGAT SFSGSNNIRG GAPMKYESMF 240 TDNMMCNNQM PYSPYVAPSI QQQSPCMMIP GADLPRRADE RVVKGKLLPY LRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019255836.1 | 1e-118 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1J6IR27 | 1e-117 | A0A1J6IR27_NICAT; Agamous-like mads-box protein agl80 | ||||
STRING | XP_009774508.1 | 1e-116 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2457 | 22 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 2e-12 | AGAMOUS-like 82 |