PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf04920g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 289aa MW: 33252.3 Da PI: 9.2507 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.7 | 1.5e-08 | 16 | 59 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +ien+ +tfskRr g+ KK + L + + ++ +i+fs+t k Peinf101Scf04920g00003.1 16 KIENEDDCFTTFSKRRSGLYKKVSKLVIQYNLDIGIILFSPTEK 59 599999999********************************987 PP | |||||||
2 | SRF-TF | 28.3 | 2.2e-09 | 131 | 172 | 4 | 45 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 en+ +tfskRr g+ KK +EL + + ++ +i+fs+t k Peinf101Scf04920g00003.1 131 ENEDDCFTTFSKRRSGLYKKVSELVIQYNLDIGIILFSPTEK 172 56666679*******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.979 | 7 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-11 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-16 | 8 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-8 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-14 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-8 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-8 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-5 | 121 | 179 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-14 | 126 | 190 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.741 | 126 | 176 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-14 | 131 | 176 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEGKMTKGRK KISMVKIENE DDCFTTFSKR RSGLYKKVSK LVIQYNLDIG IILFSPTEKP 60 FSFFHLTPEA IIDRFLYPTM QLSESTRLVA AHARSKVNQL NAMNEELNKK EAALSALALE 120 FDKMKEISAR ENEDDCFTTF SKRRSGLYKK VSELVIQYNL DIGIILFSPT EKPFSFFHLT 180 PEAIIDRFLY PTMQLSESTR LVAAHARSKV NQLNAMNEEL NKKEAALSAL ALEFDKMKEI 240 SARGWWELIE QFNANEVMKF EAWLNSTAFN MDSRLKRLKN EASSSTHSL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016474013.1 | 1e-63 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A1S4ABV1 | 3e-62 | A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61 | ||||
STRING | XP_009781581.1 | 5e-63 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-20 | AGAMOUS-like 61 |