PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf04293g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 384aa MW: 44154.2 Da PI: 4.7017 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.5e-18 | 118 | 171 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Peinf101Scf04293g00005.1 118 KKRRLRVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 171 45578899*********************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.27E-18 | 102 | 173 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 113 | 173 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-16 | 116 | 177 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.11E-14 | 118 | 173 | No hit | No description |
Pfam | PF00046 | 2.5E-15 | 118 | 171 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-19 | 125 | 172 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 144 | 153 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 148 | 171 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 153 | 169 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.4E-14 | 173 | 214 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MFIFSCLLIS ETNISDRKKN KKSLLLTLLF PFQLFSPSLP VQNFLTETKN YCTFKKLKTM 60 KRVRSTDSLG APMMSMCQNT TDDNHQWNSQ VYSRDYQSML EGLDDEACME ESGNVSEKKR 120 RLRVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKTLERDYN 180 VLKANFDSLK QNYESLQHDN EALLKELCEL KSKLHGENIE SKVSVKEEAI ESESHDDKDV 240 DQSKPNNSTC LGKCEDDDNA ELNFVESFKG ETCIMNDTIF ADFKDGSSDS DSSAILNEDN 300 GAFLISNSSS SANSSLNCFQ FLDSNAKSIF GDAHKVNYQP QFVKMEEHNF FSGEESCSTL 360 FSDEQAPSLQ WYCPEEWNWK DTPN |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00051 | PBM | Transfer from AT4G40060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 8e-75 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009588928.1 | 1e-170 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Refseq | XP_016500042.1 | 1e-170 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A1S4CFT4 | 1e-168 | A0A1S4CFT4_TOBAC; homeobox-leucine zipper protein ATHB-6-like | ||||
STRING | XP_009588928.1 | 1e-169 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2718 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-59 | homeobox protein 16 |