PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf04072g01027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 412aa MW: 46098.7 Da PI: 8.1571 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.5 | 1.5e-17 | 15 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 +ie k n vtfskRr+g++KKA+EL +LC+ae +++f+++ +k+y + Peinf101Scf04072g01027.1 15 KIEKKGNLDVTFSKRREGMFKKANELGILCGAETGIVVFAPNnNKVYSF 63 6999***********************************9862577776 PP | |||||||
2 | SRF-TF | 48.8 | 9.3e-16 | 202 | 250 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 +ie k n vtfskRr+g++KK +EL +LC+ae +++f+++ +k+y + Peinf101Scf04072g01027.1 202 KIEKKGNLDVTFSKRREGMFKKTNELDILCGAETGIVVFAPNnNKVYSF 250 6999***********************************9862577776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.647 | 6 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-22 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-23 | 7 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-13 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-20 | 15 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-13 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-13 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.694 | 193 | 254 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.0E-21 | 193 | 253 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-22 | 194 | 266 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-18 | 202 | 250 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MPRKSQGRKK VEMAKIEKKG NLDVTFSKRR EGMFKKANEL GILCGAETGI VVFAPNNNKV 60 YSFGHPSVDQ IVDRYIARYL PNDDESSDDG VNPRLIEALR KANASIINEL NEKEQALERE 120 KMRGEALRAV RRDNGEHNWW EAPINKLNYV QLQQVKEAME GAYEKVDREA LRLKTANENV 180 AFPYSNFASA LAPGRKKVEM AKIEKKGNLD VTFSKRREGM FKKTNELDIL CGAETGIVVF 240 APNNNKVYSF GHPSVDQIVD RYLARYLPND DESSDDGVNP GLIEALRKAN ASIINELNEK 300 EQALEREKMR GEALRAVRRD NGEHNWWEAP INKLNYVQLQ QVKEAMEGAY EKVDREALRL 360 KTANENVAFP YSNFASALAP GPGHNFDSSG ASGSGSTSYF DSNRASGSGS AS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_009601691.1 | 8e-54 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA25309 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-35 | AGAMOUS-like 61 |