PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03896g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GATA | ||||||||
Protein Properties | Length: 360aa MW: 40282.8 Da PI: 6.8447 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1e-17 | 254 | 288 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Peinf101Scf03896g00005.1 254 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 288 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.1E-76 | 14 | 343 | IPR016679 | Transcription factor, GATA, plant |
Gene3D | G3DSA:3.30.50.10 | 4.9E-15 | 247 | 285 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 7.3E-18 | 248 | 298 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.743 | 248 | 284 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.66E-15 | 249 | 312 | No hit | No description |
CDD | cd00202 | 3.60E-14 | 253 | 300 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 254 | 279 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.3E-15 | 254 | 288 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
METPEFFQAN YYNSQFTPEK RLSDAKNGDH FVVEDLLDLP NDDCMVNDGT LDVTVTGNSD 60 SSVVDNSCNS SLSGSNRDTQ LPSDNIIGCR NFSDGQFSSE FSVPYEDLAE LEWLSNFVEE 120 SFSSNEMHKI QLIQGMKSRT DESHTHQFIP DPNRASAATN PIFKTEVSVP AKARSKRSRM 180 APGNWASRLL VVSPSTNNNT TEAIQQDMSS SSTESGIIST SIKKTGMKST PKKKAESVPN 240 NNNIMASNSE GRKCLHCATD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP EYRPAASPTF 300 VLTKHSNSHR KVLEIRRQKE LTRAQQQQQQ FFHQNMMFDV PNGDDYLIHQ HIGPDYRQLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00530 | DAP | Transfer from AT5G25830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776828.1 | 0.0 | PREDICTED: GATA transcription factor 12 | ||||
Refseq | XP_016514226.1 | 0.0 | PREDICTED: GATA transcription factor 9-like | ||||
Swissprot | P69781 | 6e-90 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | A0A1S4DLF5 | 0.0 | A0A1S4DLF5_TOBAC; GATA transcription factor | ||||
TrEMBL | A0A1U7WDU7 | 0.0 | A0A1U7WDU7_NICSY; GATA transcription factor | ||||
STRING | XP_009776828.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1919 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 3e-80 | GATA transcription factor 12 |
Publications ? help Back to Top | |||
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