PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03470g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GRAS | ||||||||
Protein Properties | Length: 960aa MW: 108022 Da PI: 6.0142 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 247.5 | 5.2e-76 | 115 | 451 | 4 | 350 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 lL + Ae +s+++++ a+++L+ ++ as +g+p+qRl+ +f eAL++ + ++++++ + lp + + e + +++ ++ Peinf101Scf03470g00004.1 115 LLQASAERFSNQQFKHARKFLSLCNQSASATGTPVQRLVYCFGEALREIIDKETKSITS-LPLDRPG-GFELEPIDHEEVL--LC 195 677889**********************************************7777764.3333333.2355555555555..8* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfA.ee 171 P + +++++ qaIl+ v+ e+r+H iDf+i+ G +W+ L+qaLa+R + l+iT+vg sk+++e +g+rL++fA ee Peinf101Scf03470g00004.1 196 PKPHVAQFAGIQAILDNVKLERRLHLIDFGIKSGSHWIILMQALANRGdCQLELLKITAVGT----SKQMIEDIGQRLSSFAaEE 276 ***********************************************9556779********....9**************7378 PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 ++vpf+f++ v++++ +l+ + +++++ Ea+aV ++l +l+ + +le vL+++ksl+P v+vv++ ea++n+++F+er Peinf101Scf03470g00004.1 277 MKVPFSFKA-VVSEMRNLSKDLFEIDSTEAVAVYTDYRLAGMLAWPDHLEA----VLRFIKSLNPCVMVVIDTEANTNAPTFMER 356 *********.7999****************************966666665....****************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 f eal y+a+fdsl++ ++++++ r+ vE +l++ i n++a eg+er+ r+ +le Wr+ ++++G k+ +lse+ qa+ll Peinf101Scf03470g00004.1 357 FNEALFLYAAVFDSLQTCMGQNNQSRMAVEGLILRKIIHNMIASEGEERIFRNVRLEVWRALFDKFGIKETELSESSLYQAHLLA 441 ************************************************************************************* PP GRAS 342 rkvk.sdgyr 350 ++ + + g++ Peinf101Scf03470g00004.1 442 ERAApDCGMS 451 9998666665 PP | |||||||
2 | GRAS | 31.9 | 1.7e-10 | 516 | 580 | 142 | 210 |
GRAS 142 lRiTgvgspesgskeeleetgerLakf.AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlql 210 + iT+vg sk+++ee+g+rL++f Ae+++vpf+f++ v++++++l+ + ++++ +E++aV + ++l Peinf101Scf03470g00004.1 516 FLITAVGT----SKQMVEEIGQRLSSFtAENMKVPFSFKA-VVSDMKNLNKDIFELDANEVVAVYSEYHL 580 569*****....9*************97899*********.7999*******************998877 PP | |||||||
3 | GRAS | 253.4 | 8.5e-78 | 615 | 956 | 31 | 374 |
GRAS 31 aspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalkl....fsevsPilkfshltaNqaIleavege 109 + d++p+qR++ yf+eAL +r++r +++l +++ ++++ s+++++e+l+ ++ ++ P+ k++++t qaIle++++ Peinf101Scf03470g00004.1 615 QQFDRNPIQRAVYYFAEALIKRINR-GTGLPSTItaNVNAVSPDDMEEVLMDPRIdvieTEQMLPFRKVTQFTGIQAILESIKSF 698 445679*******************.55555555335666667778888888777878899************************ PP GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 +r+H iD++i+ G QW L+qaL s+ e p l+iT+vg s ++++e+g+rL++fAe+l++pf+f++ v+++l +++ Peinf101Scf03470g00004.1 699 RRIHLIDLGIKTGSQWTILMQALVSQGECPLeLLKITAVGT----SLTRIQEIGKRLSSFAETLNIPFSFRT-VVSDLRNIKKAF 778 ************************998555449********....9**************************.7999******** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +++k gE+la+ + +l + + +l+s +++++ksl P v+vv+e ea +n++ F +rf eal yysa+fd+le+ ++ + Peinf101Scf03470g00004.1 779 FELKAGEVLAIYADSRFWTLIAWPNDLKS----LIQVIKSLDPCVMVVTEIEAYTNAPIFIDRFNEALFYYSAIFDCLETCIGWN 859 *********************88888888....**************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy.rveeesgslvlgW 362 +++r++ ++lg+ i+nv++ eg+e ++rh +l Wr +e++G+++ +ls++ qakll ++ +g+ ++e + +sl++ W Peinf101Scf03470g00004.1 860 HQQRAVAQGVYLGKIIENVITSEGEEMVHRHVKLDCWRTLFEKSGLEETELSHSSLYQAKLLAERSTCHGFcSLEMDGKSLIIKW 944 *******************************************************************999637889999999*** PP GRAS 363 kdrpLvsvSaWr 374 k+ p+ s+S+W+ Peinf101Scf03470g00004.1 945 KGTPIKSLSVWK 956 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.72 | 86 | 454 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-73 | 115 | 451 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-8 | 516 | 580 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 38.486 | 559 | 935 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-75 | 615 | 956 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 960 aa Download sequence Send to blast |
MDSSLGKTTN KGKDQIQTSH CTEARKESLC QPLESCKILQ KRCCRGNLKE RHYDIPCNNC 60 SGSHVPSTVS IIEMARAQLL HYTFKKPNCS IASNSLDADC GLSPEASKDL ELAFLLQASA 120 ERFSNQQFKH ARKFLSLCNQ SASATGTPVQ RLVYCFGEAL REIIDKETKS ITSLPLDRPG 180 GFELEPIDHE EVLLCPKPHV AQFAGIQAIL DNVKLERRLH LIDFGIKSGS HWIILMQALA 240 NRGDCQLELL KITAVGTSKQ MIEDIGQRLS SFAAEEMKVP FSFKAVVSEM RNLSKDLFEI 300 DSTEAVAVYT DYRLAGMLAW PDHLEAVLRF IKSLNPCVMV VIDTEANTNA PTFMERFNEA 360 LFLYAAVFDS LQTCMGQNNQ SRMAVEGLIL RKIIHNMIAS EGEERIFRNV RLEVWRALFD 420 KFGIKETELS ESSLYQAHLL AERAAPDCGM SPKASEDLEL ALLLQASSKM FYNRDYERDI 480 NQQAGFIWLI LESKVGRTGQ SSWKPLLIEL IVHLSFLITA VGTSKQMVEE IGQRLSSFTA 540 ENMKVPFSFK AVVSDMKNLN KDIFELDANE VVAVYSEYHL GGIPLISDLG LSPQVTEEVE 600 LALLLLVSAE MLAIQQFDRN PIQRAVYYFA EALIKRINRG TGLPSTITAN VNAVSPDDME 660 EVLMDPRIDV IETEQMLPFR KVTQFTGIQA ILESIKSFRR IHLIDLGIKT GSQWTILMQA 720 LVSQGECPLE LLKITAVGTS LTRIQEIGKR LSSFAETLNI PFSFRTVVSD LRNIKKAFFE 780 LKAGEVLAIY ADSRFWTLIA WPNDLKSLIQ VIKSLDPCVM VVTEIEAYTN APIFIDRFNE 840 ALFYYSAIFD CLETCIGWNH QQRAVAQGVY LGKIIENVIT SEGEEMVHRH VKLDCWRTLF 900 EKSGLEETEL SHSSLYQAKL LAERSTCHGF CSLEMDGKSL IIKWKGTPIK SLSVWKFHNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-36 | 135 | 956 | 26 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358212.1 | 0.0 | PREDICTED: DELLA protein RGL2-like | ||||
TrEMBL | M1BZ60 | 0.0 | M1BZ60_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400056232 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8500 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 3e-52 | RGA-like 2 |