PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03275g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 275aa    MW: 31266.6 Da    PI: 9.894
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03275g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-0584106123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C++C k F+++  L  H++ H
  Peinf101Scf03275g00003.1  84 YECNYCFKNFPTSQALGGHQNAH 106
                               99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-478110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.68E-781111No hitNo description
PROSITE profilePS5015711.57284111IPR007087Zinc finger, C2H2
PfamPF139126.2E-684108IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEKKRDFMKV ESFSQLPFIR PSPVYKEKVI IRLFGKEYCS GNTSMTSSNM FKSVVETNTV  60
NLANCIAKES YNVVNNIEES RKKYECNYCF KNFPTSQALG GHQNAHKKER QQTKGAHLHH  120
HHSTWTNNIS NSARFYGSHH VNYVTSRPYS KISPTNGSPL AFCRVPPAAH QNYSNLFPND  180
DSKIFPKVKS STSESRFRYE PKAGVQDDHV AVGMCIEELQ VVQLLQYTLQ AAVEWLANYL  240
LSLTEAERLK KKSSPSTSLR VVPPRKVLEA LKSVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267119.13e-63PREDICTED: zinc finger protein 8-like
TrEMBLA0A314KZD02e-61A0A314KZD0_NICAT; Zinc finger protein 8
STRINGXP_009619423.18e-60(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14731526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.14e-31C2H2 family protein