PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03147g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | WOX | ||||||||
Protein Properties | Length: 197aa MW: 22547.9 Da PI: 10.0899 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.7e-18 | 3 | 63 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql +L++l++k r+p+ + ++++++l +++ ++V++WFqN++a++++ Peinf101Scf03147g00016.1 3 RPRWSPTPQQLMILQDLYRKgLRNPNSCQVQKITAHLslygKIQCKNVFYWFQNHKARDRQ 63 89*****************99*************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.268 | 1 | 64 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-6 | 1 | 68 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.00E-5 | 2 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-7 | 3 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.6E-16 | 3 | 63 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.23E-11 | 3 | 63 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MPRPRWSPTP QQLMILQDLY RKGLRNPNSC QVQKITAHLS LYGKIQCKNV FYWFQNHKAR 60 DRQKLRKELL HQMQKNPNDD NAHQISLLTN TTNSNVLQSV GNFPSFPPIV HTLYPQSPAI 120 FLRQAEGKDT SSAQMLNNMG KVDLQKQCMI ENGMISTNFQ GWVLMMADNG HNSIPCSSNR 180 PLETLELFPV KATGIKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 2e-68 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487673.1 | 1e-104 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A1S4BFQ5 | 1e-103 | A0A1S4BFQ5_TOBAC; WUSCHEL-related homeobox 3-like | ||||
STRING | XP_009793790.1 | 1e-104 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 8e-33 | WOX family protein |