PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf03120g01002.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

M-type_MADS

Protein Properties

Length: 108aa MW: 11866.1 Da PI: 4.1738

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf03120g01002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.9	1.3e-13	3	49	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +++++ r+ +s+ + ++KKA+ LS+LCd+eva++i s++ ++ e Peinf101Scf03120g01002.1 3 SKSEIERKALLSRNVASLFKKAQKLSILCDVEVALLISSPDENMAEL 49 678899999999999***************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.002	1	52	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.376	4	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.3E-11	5	46	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-12	5	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-5	15	30	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-5	30	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MASKSEIERK ALLSRNVASL FKKAQKLSIL CDVEVALLIS SPDENMAELA TFKMANVEEK 60 RKQLDEEDVQ PVEPPVAGDE SGTRPEPAEG DNNNAGEEKD DEHPKDSD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ168513	5e-33	FJ168513.1 Petunia x hybrida type I MADS box transcription factor (MADSy8) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B6DT65	3e-16	B6DT65_PETHY; Type I MADS box transcription factor (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14805	2	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	4e-08	MIKC_MADS family protein