PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03120g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19432 Da PI: 5.1602 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.6 | 1.4e-12 | 3 | 49 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++++s r+ +s+ + ++KKA+ LS+LCd+eva +i s++ ++ e Peinf101Scf03120g00014.1 3 SKSESERKALLSRNVASLFKKAQKLSILCDVEVAFLISSPDENMAEL 49 688999999999999***************************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0047 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-10 | 4 | 46 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.082 | 4 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-11 | 5 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MASKSESERK ALLSRNVASL FKKAQKLSIL CDVEVAFLIS SPDENMAELA TFKMANVEEK 60 RKQLDEEDVQ PVEPPVAGDE SGTRPEPAED IYGRPEDQWR GGSMPQPQYL KSKKALAYIV 120 SRIQFSIYRE TVKQRYYTFT GEKPDEAVLH ILKSTGQSET FLEKAIQEQG RG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-06 | MIKC_MADS family protein |