PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03084g00005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 350aa    MW: 39781.1 Da    PI: 8.6607
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03084g00005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.3e-06186205120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               + C++C+k+F+r  n++ H+
  Peinf101Scf03084g00005.1 186 FACNICNKTFNRYNNMQMHM 205
                               78*****************9 PP
2zf-C2H216.62.2e-05270292123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C +Cgk+F  k + ++H +++
  Peinf101Scf03084g00005.1 270 FSCRKCGKTFAVKGDWRTHEKNC 292
                               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.76E-6171209No hitNo description
SMARTSM003550.095186208IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-5186205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.7E-4186205IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.783186213IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SMARTSM00355190233265IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.31E-5256290No hitNo description
Gene3DG3DSA:3.30.160.603.1E-4257290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035532270290IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808270290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGIRNNFHVQ DMDLCSFQSP NFIEWLKPSS NSSSISPSPS SSSSSTITQP RFLHYETTNP  60
MSTFLKLPRL YHPQEVQADI NIDQTVQCLP LLSKLTDTKT ETKERDFGEK KGCFEVKEEK  120
IEKVQVSLHI GLPNMGNGCV VEAKPFNYKE EVSMEKSSKI NGCSFNSESR FWIPTPAQIL  180
VGPMQFACNI CNKTFNRYNN MQMHMWGHGS EYRKGPESLR GTQPAAMLRL PCYCCAQGCK  240
NNINHPRAKP LKDFRTLQTH YKRKHGTKAF SCRKCGKTFA VKGDWRTHEK NCGKLWYCTC  300
GSDFKHKRSL KDHIRSFGNG HSPHPSLDGF EDDNKECITG GSTDDENLIN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-120HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232596.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-125ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1J6KZ540.0A0A1J6KZ54_NICAT; Zinc finger protein wip3
STRINGXP_009609728.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-120WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]