PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03039g03004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 279aa    MW: 30144.7 Da    PI: 7.586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03039g03004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05106128123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC+ C+ksFs+   L  H  +H
  Peinf101Scf03039g03004.1 106 YKCSVCDKSFSSYQALGGHKASH 128
                               9***********99999998887 PP
2zf-C2H213.90.00016171193123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F++   L  H r+H
  Peinf101Scf03039g03004.1 171 HVCSICHKAFPTGQALGGHKRRH 193
                               79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-4101129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.77E-9105128No hitNo description
PROSITE profilePS5015710.263106128IPR007087Zinc finger, C2H2
PfamPF139125.5E-14106130IPR007087Zinc finger, C2H2
SMARTSM003550.0034106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576672.77E-9166193No hitNo description
PfamPF139129.1E-12171195IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619171198IPR007087Zinc finger, C2H2
SMARTSM003550.065171193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MALEALKSPT AATPTLPPRY EDQVDMNNLD SWVKGKRSKR PRIETPPSEE EYLALCLIML  60
ARSGNGTTPS SIPGSTDITA ITTISKEPEK KNRDVTPVHQ ETEQSYKCSV CDKSFSSYQA  120
LGGHKASHRK ITTIATTALL DDNNNNPTTS NSTSGNVVNN ISALNPSGRS HVCSICHKAF  180
PTGQALGGHK RRHYEGKLGG NNNNNHRDGG GHSGSVVTSS DGGASTHTLR DFDLNMLPPS  240
PELQLGLSID CDLKSQIPIE QEVESPMPLK KPRLLFSMD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPETZFDB20.0D26084.1 Petunia x hybrida mRNA for zinc-finger DNA binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240274.11e-133PREDICTED: zinc finger protein ZAT10-like
TrEMBLQ408971e-179Q40897_PETHY; Zinc-finger DNA binding protein
STRINGXP_009625229.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-49salt tolerance zinc finger