PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03000g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 377aa MW: 42113.1 Da PI: 7.0038 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.8 | 1.4e-06 | 214 | 256 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Peinf101Scf03000g00020.1 214 DKVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 256 589******************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.738 | 205 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-7 | 211 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-13 | 214 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.24E-7 | 215 | 260 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-12 | 218 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MAAYSYQLQH TNPFLVDTVF LPSSPIKMSG YLEEPNNQNY FSQFYQLPES CQQLPTNMIV 60 HESSYCLDQS TNVTLSQNEP SETNKSSSSN ILDIESSSVT DKIETGNKPM NKKRKAREGS 120 NSSMSSAHSK NVKEGDHGKK KKNNSQVSKD AKEKKGSDDN KKEENKSHEE APTGYIHVRA 180 RRGQATDSHS LAERVLEKIS ERMKILQSLV PGCDKVRREK ISERMKILQS LVPGCDKVTG 240 KALMLDEIIN YVQSLQNQVE FLSMKLASSN PMYYDFGMDL DALMVRPNQN LGGLETPLPN 300 IQQTSITDTT PQAAAVIPNI NNGYPFLDNS ASLLFQQAHF PNSNSQGNGQ LLWGADDQRQ 360 KITIDQSGFS NNFCSFH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE653924 | 0.0 | HE653924.1 Nicotiana tabacum mRNA for bHLH trascription factor (upp-L gene), cultivar Samsun nn. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312696.1 | 0.0 | transcription factor bHLH137-like | ||||
Refseq | XP_009786910.1 | 0.0 | PREDICTED: transcription factor bHLH137 | ||||
TrEMBL | A0A1U7XK93 | 0.0 | A0A1U7XK93_NICSY; transcription factor bHLH137 | ||||
TrEMBL | M5BCF4 | 0.0 | M5BCF4_TOBAC; BHLH transcription factor | ||||
STRING | XP_009786910.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4116 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 2e-56 | bHLH family protein |