PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02762g00008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family B3
Protein Properties Length: 293aa    MW: 34147.6 Da    PI: 10.2397
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02762g00008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-14281041794
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                +p k +++ + +++   + +l+ +sg+sW+v++  r  ++ yv+ +GW+ Fvk+++L++ D +vF+ dg s+f + +
  Peinf101Scf02762g00008.1  28 LIPHKLVTNLKDSHKLLGQKILKGPSGNSWKVEV-KRTEDDDYVFCNGWELFVKDHNLEAEDLLVFRTDGFSSFDYSF 104
                               6788888666444455556778************.3555555*************************87768877666 PP
2B365.11e-20179264492
                               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                               v++++ +  +g+l +pk fa+ +  +k e   + l+  +sgr+W+v +  r+++++ v+++GW++Fv +n+L+e D++vF+l + 
  Peinf101Scf02762g00008.1 179 VTMQPTHVDRGQLKIPKGFADMYTRNKSE--IINLTIpSSGRTWKVSV--RRRQEGLVMQTGWEDFVMDNNLEEYDICVFELAQG 259
                               455677777788***********877555..5666664799*******..*******************************9865 PP

                               SEE.. CS
                        B3  88 sefel 92 
                                + +l
  Peinf101Scf02762g00008.1 260 GKHNL 264
                               44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.7E-425110IPR003340B3 DNA binding domain
PfamPF023622.4E-1227105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-1328101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-1329105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1148108IPR003340B3 DNA binding domain
CDDcd100172.42E-114899No hitNo description
SuperFamilySSF1019364.51E-22174275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-23175275IPR015300DNA-binding pseudobarrel domain
CDDcd100176.65E-16175275No hitNo description
PROSITE profilePS5086313.93176277IPR003340B3 DNA binding domain
SMARTSM010198.3E-17177272IPR003340B3 DNA binding domain
PfamPF023623.7E-18178265IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MATICERCKG LEKKKYWEKF NKQQFFKLIP HKLVTNLKDS HKLLGQKILK GPSGNSWKVE  60
VKRTEDDDYV FCNGWELFVK DHNLEAEDLL VFRTDGFSSF DYSFHLPEPS KGKKLNKILI  120
AKQEKRKRKC TPLSSCKKKM GLDERSHMFS NKRLVTQKER RKVLQMASRH ISFVPTFLVT  180
MQPTHVDRGQ LKIPKGFADM YTRNKSEIIN LTIPSSGRTW KVSVRRRQEG LVMQTGWEDF  240
VMDNNLEEYD ICVFELAQGG KHNLKPVILD VYIFRAVDEI TRPSSSNSTP IIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631052.11e-126PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A1S4DND11e-124A0A1S4DND1_TOBAC; B3 domain-containing protein REM16-like
STRINGXP_009631052.11e-125(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-23B3 family protein