PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02715g00007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

TCP

Protein Properties

Length: 326aa MW: 34636.4 Da PI: 9.0189

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02715g00007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.4	2.9e-39	41	146	5	112
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++ ++tieWLlqqa+p+i+++tgt++++a+++ + s +ss+ + s++ Peinf101Scf02715g00007.1 41 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSEGETIEWLLQQAEPSIIAATGTGTIPANFStLNLSLRSSGTTISAP 125 899***************************************************************9997666666666644444 PP TCP 89 ...........kaaksaakskksqksaasalnlak 112 a+++l +++ Peinf101Scf02715g00007.1 126 psksaplfmhgG--------------ATTMLGFQH 146 443333444331..............222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.706	44	98	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.2E-37	44	165	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MEFRETHGKN QDGGGNSAMT TNTNNNNNGD NNNSLTTKIV KKPSKDRHTK VDGRGRRIRM 60 PALCAARVFQ LTRELGHKSE GETIEWLLQQ AEPSIIAATG TGTIPANFST LNLSLRSSGT 120 TISAPPSKSA PLFMHGGATT MLGFQHTNFG QDTNGNSMKK RYREDTSGAT SPSAAEPVGQ 180 ESKPGSGNFI PAPGMWAVAP ASGNVGSAFW MLPVTGGAGA TTASVGVSQQ DHQLWQYKGL 240 AMQRLDGYEL SGGAQFSTPV QLGSMFLQQP VQQLGLGVPE TNMGMLASMN AYSSSRSNKV 300 NLGMNLEQHH HQGSDSGDEN HKDSQS

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775051.1	1e-150	PREDICTED: transcription factor TCP23-like
Swissprot	Q9C518	1e-64	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1U7WCU1	1e-149	A0A1U7WCU1_NICSY; transcription factor TCP23-like
STRING	XP_009775051.1	1e-149	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	7e-60	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]