PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02635g02018.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

CPP

Protein Properties

Length: 976aa MW: 105330 Da PI: 7.3968

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02635g02018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.7	3e-15	555	593	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag +C+ +C+C++C N+ e Peinf101Scf02635g02018.1 555 CKRCNCKKTKCLKLYCDCFAAGIYCAGSCTCQGCLNRPE 593 79**********************************876 PP
2	TCR	47.1	4.7e-15	642	679	1	38
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 ++k+gCnCkks C+kkYCeC++a++ Cs+ C+Ce+CkN Peinf101Scf02635g02018.1 642 RHKRGCNCKKSMCQKKYCECYQANVGCSNGCRCEGCKN 679 589**********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.6E-13	553	594	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	33.358	554	682	IPR005172	CRC domain
Pfam	PF03638	3.3E-11	556	591	IPR005172	CRC domain
SMART	SM01114	3.1E-14	642	683	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.9E-10	644	679	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MVHAGCSKVY EVFPPSMCFS YFCLFWSQDS PVFTYISNLS PIQPVKGATV VQGFPGLNSP 60 PLVFTSPRFN VHSRSSFLKR SHFPQLSSEA FSGKNDDYND TTTDSDGTGL SVSQLRSEQS 120 PVQKVSDNNI SVHKQSGSLV RCADEFLVDV SNSGSGNPSN LTNPSPKEAD NIPQSPNTAA 180 ESKESVANLG NKDDARKDKI PNDAAFAVVE KAEEDNKGKC SSDQKFIGFN SSNIDSDFSS 240 PDLCAKIEPN LPADSSLHHH YGDHCMAQLS RADHPMLDEN SIQTKPLETA HDCRDNIDKI 300 NTASSADESN VQHDSQTKAG QHQSGIRRRC LQFEDAQQKI APTSSCSQNA SGTVSFPGPP 360 VSPAFSEVVE SVSSNRSSTA SNSLLTQLES SSDNSGSFAV KVPKPSGIGL HLNSILNAMH 420 AGSGATVSVK SAERGNLSIR GKKLASMMSC HPSENLKKCL ISNVVGGNMT SGDDDGKLES 480 DASNADNLAA SLSLNNAKHL SDTALLRPTE HTPSHKRKSN SGYIDSSMNY NQSSPKKKRQ 540 ACLKKPPDAN DVDGCKRCNC KKTKCLKLYC DCFAAGIYCA GSCTCQGCLN RPEYEDTVLD 600 VRQQIQSRNP LAFVSKIVQR PTDLPANILQ EDGASFTPSS ARHKRGCNCK KSMCQKKYCE 660 CYQANVGCSN GCRCEGCKNI YGVKEEYGKE LVNKHCITER LERSVREKVE MVTATSGLLQ 720 SDPSNRCNLT PLTPSFHCSD RGKNASNSWF TPGKYLSLPE SGQAITAAYG LSPGSPRSST 780 NHDINQQTAG DILDLVTFDP DFNIGNANLA NEFSPVFHVP SNMVDLSALS KSQDWASNSG 840 GQLIPRTVQS QPTRPSCWRN SPMTPMTQFD GSGMNALESL DSDKKSNVIE DDTPEILKDS 900 SVPLRGVKVS SPNKKRVSPP HCHLNEVGSS SSGRGLTSRK FILQAVPLFP PLTPCIGSKD 960 VAAHNTDNCQ KDSSSK

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MVHAGCSKVY EVFPPSMCFS YFCLFWSQDS PVFTYISNLS PIQPVKGATV VQGFPGLNSP  60
PLVFTSPRFN VHSRSSFLKR SHFPQLSSEA FSGKNDDYND TTTDSDGTGL SVSQLRSEQS  120
PVQKVSDNNI SVHKQSGSLV RCADEFLVDV SNSGSGNPSN LTNPSPKEAD NIPQSPNTAA  180
ESKESVANLG NKDDARKDKI PNDAAFAVVE KAEEDNKGKC SSDQKFIGFN SSNIDSDFSS  240
PDLCAKIEPN LPADSSLHHH YGDHCMAQLS RADHPMLDEN SIQTKPLETA HDCRDNIDKI  300
NTASSADESN VQHDSQTKAG QHQSGIRRRC LQFEDAQQKI APTSSCSQNA SGTVSFPGPP  360
VSPAFSEVVE SVSSNRSSTA SNSLLTQLES SSDNSGSFAV KVPKPSGIGL HLNSILNAMH  420
AGSGATVSVK SAERGNLSIR GKKLASMMSC HPSENLKKCL ISNVVGGNMT SGDDDGKLES  480
DASNADNLAA SLSLNNAKHL SDTALLRPTE HTPSHKRKSN SGYIDSSMNY NQSSPKKKRQ  540
ACLKKPPDAN DVDGCKRCNC KKTKCLKLYC DCFAAGIYCA GSCTCQGCLN RPEYEDTVLD  600
VRQQIQSRNP LAFVSKIVQR PTDLPANILQ EDGASFTPSS ARHKRGCNCK KSMCQKKYCE  660
CYQANVGCSN GCRCEGCKNI YGVKEEYGKE LVNKHCITER LERSVREKVE MVTATSGLLQ  720
SDPSNRCNLT PLTPSFHCSD RGKNASNSWF TPGKYLSLPE SGQAITAAYG LSPGSPRSST  780
NHDINQQTAG DILDLVTFDP DFNIGNANLA NEFSPVFHVP SNMVDLSALS KSQDWASNSG  840
GQLIPRTVQS QPTRPSCWRN SPMTPMTQFD GSGMNALESL DSDKKSNVIE DDTPEILKDS  900
SVPLRGVKVS SPNKKRVSPP HCHLNEVGSS SSGRGLTSRK FILQAVPLFP PLTPCIGSKD  960
VAAHNTDNCQ KDSSSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-15	556	680	12	121	Protein lin-54 homolog
5fd3_B	3e-15	556	680	12	121	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085212.1	0.0	protein tesmin/TSO1-like CXC 2
Refseq	XP_015085213.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A2G3BRZ7	0.0	A0A2G3BRZ7_CAPCH; CRC domain-containing protein TSO1
STRING	XP_009591884.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6980	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-54	Tesmin/TSO1-like CXC domain-containing protein