PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02621g01040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ARR-B | ||||||||
Protein Properties | Length: 683aa MW: 74951.1 Da PI: 6.7386 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.7 | 6.2e-29 | 217 | 270 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Peinf101Scf02621g01040.1 217 KPRVVWSVELHQQFVQAVHQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 270 79*******************.********************************8 PP | |||||||
2 | Response_reg | 81.3 | 3.1e-27 | 36 | 144 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 vl+vdD+p+ +++l+++l++ +y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a ++ Peinf101Scf02621g01040.1 36 VLVVDDDPTCLRILEKMLRNCHY-EVTKCNRAEVALSLLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSR 118 89*********************.***************999999**********************6654.8************ PP HHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 84 edalealkaGakdflsKpfdpeelvk 109 + + + + Ga d+l Kp+ +e+l + Peinf101Scf02621g01040.1 119 DVVMKGVTHGAYDYLIKPVRIEALKN 144 **********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 6.8E-182 | 10 | 664 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 2.28E-36 | 33 | 157 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.4E-42 | 33 | 157 | No hit | No description |
SMART | SM00448 | 1.8E-31 | 34 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.576 | 35 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.9E-24 | 36 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.55E-28 | 37 | 149 | No hit | No description |
PROSITE profile | PS51294 | 12.022 | 214 | 273 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-20 | 215 | 274 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-30 | 216 | 275 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-25 | 217 | 270 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.0E-9 | 219 | 269 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MNLGSGVVNT MSVASSKGSW KSCDGVKDQF PVGLRVLVVD DDPTCLRILE KMLRNCHYEV 60 TKCNRAEVAL SLLRENKNGF DIVISDVHMP DMDGFKLLEH IGLEMDLPVI MMSADDSRDV 120 VMKGVTHGAY DYLIKPVRIE ALKNIWQHVV RKKKHEWKDN SFEQSGSVEE GDRQQKPPED 180 VDYASSANEG NWKNSKRRRE EEEEEAEERD DTSSLKKPRV VWSVELHQQF VQAVHQLGID 240 KAVPKKILEL MNVPGLTREN VASHLQKYRL YLKRLSGVSQ HPSGLNNSFM GRPEAAFGTI 300 SSLNGLDLQA IAATGQIPAQ SLATLQAAAL GRSATKANIS MPLVDQRNLF SFENSKLRFP 360 EAQLNNSNKQ IDLLHGIPTN MEPKQLANLH HPSQSFVGMN MQVNSSAQHN NSLLMQMSRS 420 QPRAQMLNGA NNGGQVSRLP LSMQQPLSSD GIHGAVLAQS GIVDNTGGSV YNPVSQASSM 480 VDFSLNQSKE LQGYNFSLVS NSSGMPTLPN RGMLQEEVNS VKGSRGYPPS YDIFNELHQQ 540 KTQNWGLQNI GPTFDASHHS SMQGTQGVSS SLLLQGTSST HNSGQNRNAP IGKSVYSDGG 600 ESGYVNPMGG PQRNSVGGNM LAVKAERFPG ADYQSNIFPE QFGQEDLMSA LLKQQGSVGA 660 VETEFGFDGY TLDNLPRANA LTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-21 | 213 | 276 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591695.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like isoform X1 | ||||
Refseq | XP_009591696.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like isoform X1 | ||||
Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
TrEMBL | A0A1J6I209 | 0.0 | A0A1J6I209_NICAT; Two-component response regulator | ||||
STRING | XP_009591694.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3191 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 1e-175 | response regulator 1 |