PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02569g03023.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 431aa    MW: 49759.8 Da    PI: 5.9998
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02569g03023.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.81.1e-15136227190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 
                               +fY ++Ak++  s r ++  + ++   i+kr++vC + g ++++k  +++++r r+++r++Ckak+ ++k+       w+v ++ 
  Peinf101Scf02569g03023.1 136 NFYVKFAKKMV-SRRERHLGSGEHPMGIYKREYVCHRAGIPRSQKVVEKERQRDRKSSRCNCKAKMSISKDIidgMTIWKVVHFY 219
                               69999999984.444444455577777*****************999999999*****************98766789******* PP

                      FAR1  83 leHnHela 90 
                               + HnHel 
  Peinf101Scf02569g03023.1 220 NSHNHELL 227
                               ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF533832.35E-1515110IPR015424Pyridoxal phosphate-dependent transferase
PfamPF002822.2E-93399IPR002129Pyridoxal phosphate-dependent decarboxylase
PfamPF031011.0E-12136227IPR004330FAR1 DNA binding domain
PfamPF105512.8E-22349430IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019752Biological Processcarboxylic acid metabolic process
GO:0016831Molecular Functioncarboxy-lyase activity
GO:0030170Molecular Functionpyridoxal phosphate binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MVLPKAASEN DVSVHSTFAS RYVRVSLPRF KIPDNSIPKE AAYQIINDEL MLDGNPRLNL  60
ASFVTTWMEP ECEKLIMAII NKNYVDMDDY PVTTELQAMA ESTISNNEHG QESVIDISDC  120
DMQEGKMFKS DDEAYNFYVK FAKKMVSRRE RHLGSGEHPM GIYKREYVCH RAGIPRSQKV  180
VEKERQRDRK SSRCNCKAKM SISKDIIDGM TIWKVVHFYN SHNHELLNDK EVRFLPAYRN  240
IDIVDQKRIT LLAKAGCSVS LIRRVLELEK GIDPGELPFT EKDIRNFVQS ESYINIEDDA  300
LELLKICKSF KDKDVDFQYD FTVDECQRLE HIIWAFGDSI RAYEVFGDVV VFDTTYRLNR  360
YEMPLGVWIG VDNHGNSIFF GCVLLRNEKA SSFSWALKRF LRLMNGKHPQ TILTDQDLGL  420
TEAIANELPQ T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hbx_A2e-51197197Glutamate decarboxylase 1
3hbx_B2e-51197197Glutamate decarboxylase 1
3hbx_C2e-51197197Glutamate decarboxylase 1
3hbx_D2e-51197197Glutamate decarboxylase 1
3hbx_E2e-51197197Glutamate decarboxylase 1
3hbx_F2e-51197197Glutamate decarboxylase 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755173e-65HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016499085.11e-162PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY661e-106FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1S4CD641e-160A0A1S4CD64_TOBAC; protein FAR1-RELATED SEQUENCE 11-like
STRINGXP_009596355.11e-133(Nicotiana tomentosiformis)
STRINGXP_008803488.11e-133(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7183722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-108FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]