PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02312g04048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | GATA | ||||||||
Protein Properties | Length: 256aa MW: 27404.7 Da PI: 4.16 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 42 | 1.3e-13 | 229 | 256 | 1 | 28 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGl 28 C +C + kTp+WR gp g+ktLCnaCG+ Peinf101Scf02312g04048.1 229 CLHCASEKTPQWRTGPLGPKTLCNACGV 256 99************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.0033 | 223 | 256 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.347 | 223 | 256 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-10 | 225 | 256 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 7.6E-10 | 225 | 256 | No hit | No description |
CDD | cd00202 | 1.49E-9 | 228 | 255 | No hit | No description |
Pfam | PF00320 | 2.7E-11 | 229 | 256 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 229 | 254 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEAPEFFVNG YFSNAVDEQN NNNNNNNNFT VDDLLDFPKE DDVMTDAFFD SITGNNSADS 60 STVTVVDSCN SSVSGGDGNF NGNLSCRSFT DAPFPSSELC VPYDDLAELE WLSNFVEESF 120 SSDDIQNLQL IPVANINSTT NTTTDSSSSA TTGTTSPPAF PADTSVPGKA RSKRSRNAPC 180 DWSSRLQLLL SPATSSSESN NSASNTSFTG KVIKAPKKRE SVETPGRKCL HCASEKTPQW 240 RTGPLGPKTL CNACGV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009628152.1 | 1e-140 | PREDICTED: GATA transcription factor 12-like | ||||
TrEMBL | A0A1S4A1G8 | 1e-138 | A0A1S4A1G8_TOBAC; GATA transcription factor | ||||
STRING | XP_009628152.1 | 1e-140 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1919 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 3e-32 | GATA transcription factor 12 |