PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02312g04015.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

ERF

Protein Properties

Length: 178aa MW: 19249.5 Da PI: 4.5716

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02312g04015.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.3	1.2e-15	2	45	10	56
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++ge Peinf101Scf02312g04015.1 2 RSWGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALSIKGE 45 57********854...6**********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.2E-26	1	53	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-29	1	58	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.231	1	52	IPR001471	AP2/ERF domain
CDD	cd00018	5.89E-29	1	54	No hit	No description
SuperFamily	SSF54171	1.31E-17	2	53	IPR016177	DNA-binding domain
Pfam	PF00847	7.7E-10	2	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MRSWGKWVSE IREPKKKSRI WLGTYPTAEM AARAHDVAAL SIKGESAILN FPNLVGSLPR 60 PVSNLPRDVQ AAAAKAATMN LDLVTVTSSS SSSSSSSSSS SSSSSSLKTI TSGSEELGEI 120 IELPSLEESF EPNEMRLSDS VEGLLYSPWW ASSDSEFCGY FLEQSLIPSS FETLKWAC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-15	2	53	21	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799693.1	6e-79	PREDICTED: ethylene-responsive transcription factor TINY-like
Refseq	XP_016493944.1	6e-79	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	7e-49	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1S4BYT8	1e-77	A0A1S4BYT8_TOBAC; ethylene-responsive transcription factor TINY-like
TrEMBL	A0A1U7Y9A7	1e-77	A0A1U7Y9A7_NICSY; ethylene-responsive transcription factor TINY-like
STRING	XP_009799693.1	2e-78	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	9e-49	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]