PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02232g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 238aa MW: 27201.9 Da PI: 8.3605 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1e-18 | 75 | 129 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Peinf101Scf02232g00005.1 75 RKKLRLTKEQSIILEESFKEHSTLNPKQKLTLAKRLGLRPRQVEVWFQNRRARTK 129 678899***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 4.2E-14 | 2 | 43 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 7.8E-18 | 59 | 125 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.41E-19 | 66 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 71 | 131 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 73 | 135 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-16 | 75 | 129 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.59E-15 | 75 | 132 | No hit | No description |
PRINTS | PR00031 | 2.3E-5 | 102 | 111 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.3E-5 | 111 | 127 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 2.3E-24 | 131 | 174 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 7.9E-11 | 131 | 165 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
METRSFLKGI DVNRVADTEE EAGVSSPNST ISTVSGNKRN EREANYCEDN MIEMERACSR 60 GGIINSDEED GETCRKKLRL TKEQSIILEE SFKEHSTLNP KQKLTLAKRL GLRPRQVEVW 120 FQNRRARTKL KQTEVDYEFL KRCVENLTEE NRRLQKEVQE LRGLKRSPQF YMQMTPPTTL 180 TMCPSCELVA SGPTNTPVNI GPQQLGPSQQ QPMPFNLWAT TPIPQGPLDS YPLLGRQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 131 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019228499.1 | 1e-131 | PREDICTED: homeobox-leucine zipper protein HAT4-like isoform X1 | ||||
Swissprot | P46602 | 2e-82 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A314KNB1 | 1e-130 | A0A314KNB1_NICAT; Homeobox-leucine zipper protein hat4 | ||||
STRING | Solyc06g060830.2.1 | 1e-126 | (Solanum lycopersicum) | ||||
STRING | XP_009788263.1 | 1e-126 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1118 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 4e-84 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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